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A kind of dna-markeri molecular weight standard and its preparation method and application

A molecular weight standard and restriction endonuclease technology, applied in the biological field, can solve the problems of DNA fragment yield limitation, time-consuming and laborious, and complicated preparation steps.

Active Publication Date: 2019-12-03
福建省农业科学院农业质量标准与检测技术研究所
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, there are obvious deficiencies in the method of obtaining DNA fragments by PCR amplification. First, the requirements for production conditions are high. PCR amplification requires not only professional PCR equipment, but also relevant knowledge of molecular biology and primer design. PCR reagents such as Taq enzyme and dNTP also need to be purchased additionally
The second is that the yield of DNA fragments is easily limited. A PCR machine has 96 wells, and the sample volume of each PCR tube is 100 microliters. After the PCR amplification reaction is completed, the volume is about 90 microliters, and only about 8 milliliters can be obtained at most at one time.
The third is that the DNA fragments amplified by PCR are not unique, and are often accompanied by non-specific bands or primer dimers. In order to remove non-specific bands or primer dimers, additional separation and purification steps are required, which not only increases the production cost of DNA Marker , it also appears that the steps are cumbersome
Therefore, the preparation of DNA Marker I by DNA fragment mixing method is not only cumbersome, time-consuming and labor-intensive, but also difficult to standardize the production process, which may easily cause differences in band brightness between different batches of DNA Marker I.

Method used

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  • A kind of dna-markeri molecular weight standard and its preparation method and application
  • A kind of dna-markeri molecular weight standard and its preparation method and application
  • A kind of dna-markeri molecular weight standard and its preparation method and application

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preparation example Construction

[0035] 2) Preparation of pBS-T vector

[0036] The preparation method of the pBS-T vector in the present invention is prepared according to the invention patent "A Method for Constructing T Vector Based on Taq Enzyme Terminal Transferase Activity" (Patent No.: ZL2014102312328).

[0037] See the subsequent embodiment 1 for detailed steps.

[0038] 3) PCR amplification of the insert

[0039] Using the lambda DNA sequence as a template, Primer Premier 5 software was used to design three pairs of PCR amplification primers to amplify three insert fragments of 4236bp, 5036bp and 1836bp without the restriction site of EcoR I, respectively. After amplification, the 3 inserts were purified using a PCR product purification kit (Shanghai Sangon) for TA cloning of the inserts in the next step. See the subsequent embodiment 2 for detailed steps.

[0040] 4) TA cloning of the insert

[0041] The self-made pBS-T vector and the purified 4236bp, 5036bp and 1836bp PCR fragments were TA clon...

Embodiment 1

[0059] Embodiment 1: Preparation of pBS-T vector

[0060] The pBS-T vector was prepared by using pBluescriptII SK(-) vector as the backbone (hereinafter referred to as pBS vector). It includes the following three steps: 1. Linearization of the pBS vector → 2. Adding T to the 3'-end of the linearized pBS vector line → 3. Removing the non-added T vector at the 3'-end. The detailed reaction system and reaction parameters are prepared with reference to the invention patent "A Method for Constructing T Vector Based on Taq Enzyme Terminal Transferase Activity" (patent number: ZL2014102312328).

Embodiment 2

[0061] Example 2: PCR Amplification of Inserts

[0062] Primer design

[0063] According to the lambda DNA gene sequence (Accession: M17233) registered in Genbank, use PrimerPremier V5.0 software to design 3 pairs of amplification primers with different fragment sizes to amplify three insertions without EcoR I restriction sites of 4236bp, 5036bp and 1836bp respectively fragment. The primers were synthesized by Shanghai Sangon Bioengineering Company. See Table 1 for specific primer sequences and insert fragment information.

[0064] Table 1 Insert fragment PCR amplification primers

[0065]

[0066] 2. Amplification

[0067] PCR amplification is a conventional technique in molecular biology. For the amplification of three inserts of different lengths, it is only necessary to make corresponding adjustments according to the annealing temperature of the primers and the extension speed of the DNA polymerase. In this embodiment, PCR amplification of a 4236bp fragment is desc...

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Abstract

The invention provides a preparation method of DNA-Marker I molecular weight standard. The preparation method includes: allocating 9 DNAs of different lengths to three plasmids; performing restrictionenzyme digestion with restriction enzyme and then mixing restriction fragments to obtain the DNA-Marker I molecular weight standard. With the method, the problem that the fragments, of DNA Marker, prepared with a DNA restriction enzyme digestion method in the prior art are uneven in brightness is solved, the DNA fragments are identical in brightness by adding copy number of the different DNA fragments and mixing weight ratio of enzyme-digested products of the plasmids, and the problem about unstable quality among batches is solved.

Description

technical field [0001] The invention belongs to the field of biotechnology, and in particular relates to a DNA Marker I molecular weight standard and a preparation method and application thereof. Background technique [0002] DNA molecular weight standard, also known as DNA Marker, is a qualitative or quantitative reference for DNA fragments often used in molecular biology electrophoresis experiments, and generally consists of a series of DNA fragments of different lengths. In agarose electrophoresis, the length and concentration of DNA fragments can be roughly estimated by electrophoresis analysis of DNA Marker and DNA fragments together. [0003] There are generally two methods for the preparation of DNA Markers: DNA fragment mixing method and plasmid restriction enzyme digestion method. [0004] The DNA fragment mixing method is generally formed by mixing single DNA fragments of different lengths. The PCR amplification method is a conventional method to obtain a single ...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10C12N15/11C12N15/64
CPCC12N15/10C12N15/11C12N15/64C12Q2521/301
Inventor 吕新李玥仁陈丽华刘兰英黄薇
Owner 福建省农业科学院农业质量标准与检测技术研究所
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