一种基于多模态语义对齐的药物-药物相互作用预测方法

By integrating text, molecular structure, and knowledge graph modalities through the MultiMod-DDI framework and utilizing adaptive positional interaction vectors and the ProbSparse self-attention mechanism, the problems of insufficient semantic alignment and long-distance dependency modeling ability in drug-drug interaction prediction are solved, achieving more accurate DDI prediction and clinical decision support.

CN121215085BActive Publication Date: 2026-07-17GUANGDONG PHARMA UNIV

Patent Information

Authority / Receiving Office
CN · China
Patent Type
Patents(China)
Current Assignee / Owner
GUANGDONG PHARMA UNIV
Filing Date
2025-09-16
Publication Date
2026-07-17

AI Technical Summary

Technical Problem

Existing methods suffer from insufficient semantic alignment when fusing molecular structure, biomedical entity knowledge graphs, and biomedical entity text semantics. This makes it difficult to fully explore the deep mechanisms by which drug molecular structure affects efficacy through biomedical entities, and the methods also have limited ability to model long-distance semantic dependencies in text, resulting in inaccurate identification of drug-drug interaction relationships.

Method used

The MultiMod-DDI framework is adopted to integrate three data modalities: text, molecular structure, and knowledge graph. Text is encoded using the BioBERT model, and adaptive positional interaction vectors are introduced to construct a molecular graph neural network PS-AEGNN with a ProbSparse self-attention mechanism. Combined with a multi-stage adaptive fusion module, the synergistic effect of multimodal data is realized.

Benefits of technology

It significantly improves the accuracy and interpretability of drug-drug interaction prediction, captures deep relationships through cross-modal information fusion, solves the problem of insufficient long-distance dependency modeling capabilities, provides more accurate DDI prediction results, and supports clinical decision-making.

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Abstract

本申请的实施例公开了一种基于多模态语义对齐的药物‑药物相互作用预测方法,涉及生物医学预测技术领域;所述基于多模态语义对齐的药物‑药物相互作用预测方法,旨在解决模型进行DDI分类的效果不佳的技术问题;包括以下步骤:获取SemEval‑2013Task 9数据集的文本特征集、分子结构特征集和子图特征集;将所述子图特征集和所述分子结构特征集通过子图‑分子交叉注意力模块进行特征融合后,与所述文本特征集一并输入至文本引导融合模块,以获得文本融合特征集;将所述文本特征集、所述分子结构特征集和所述子图特征集进行拼接处理后,与所述文本融合特征集进行残差连接处理和拼接处理,并进行层归一化处理,获得目标多模态融合数据。
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