一种基于染色体互作的基因组结构变异检测方法和系统

By employing multimodal information fusion and a two-stage detection framework, the problems of insufficient information utilization and high false positive rate in chromosome structural variation detection are solved, achieving efficient and accurate variation detection.

CN121506240BActive Publication Date: 2026-07-17XI AN JIAOTONG UNIV

Patent Information

Authority / Receiving Office
CN · China
Patent Type
Patents(China)
Current Assignee / Owner
XI AN JIAOTONG UNIV
Filing Date
2025-12-08
Publication Date
2026-07-17

AI Technical Summary

Technical Problem

Existing methods for detecting chromosomal structural variations suffer from several problems: insufficient information utilization due to a single data source; high false positive rates due to improper handling of unbalanced categories; and complex and inefficient detection procedures.

Method used

Multimodal information fusion technology is used to deeply integrate the spatial interaction patterns of the Hi-C interaction matrix with the sequencing coverage information of the BAM file. By using RGB three-channel image encoding and combining it with a ResNet-based classification network, a two-stage detection framework is used to screen candidate regions and identify variant types.

Benefits of technology

It improves detection accuracy, reduces false positive rate, and enhances computational efficiency, achieving efficient and accurate detection of chromosomal structural variations.

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Abstract

本发明属于生物信息处理技术领域,具体涉及一种基于染色体互作的基因组结构变异检测方法和系统;包括:获取Hi‑C互作矩阵和测序比对文件;对Hi‑C互作矩阵标准化处理得到标准化矩阵;将Hi‑C互作矩阵划分为子矩阵窗口,对子矩阵窗口进行DETR过滤,得到候选子矩阵;根据候选子矩阵的基因组坐标从测序比对文件中提取测序覆盖率信息;将标准化矩阵与测序覆盖率信息融合,得到三通道RGB图像;提取三通道RGB图像的特征向量,基于特征向量确定结构变异类型,输出结构变异类型及其基因组位置信息,解决了现有染色体结构变异检测方法中单一数据源信息利用不充分、假阳性率高的问题,克服了泛化能力弱、计算效率低的局限性。
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