Anti-DLL3 / b7h3 antibodies and uses thereof
Patent Information
- Authority / Receiving Office
- WO · WO
- Patent Type
- Applications
- Current Assignee / Owner
- BIOCYTOGEN PHARMACEUTICALS (BEIJING) CO LTD
- Filing Date
- 2025-12-19
- Publication Date
- 2026-06-25
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Figure CN2025143719_25062026_PF_FP_ABST
Abstract
Description
ANTI-DLL3 / B7H3 ANTIBODIES AND USES THEREOF
[0001] CLAIM OF PRIORITY
[0002] This application claims the benefit ofPCT Application No. PCT / CN2024 / 140987, filed on December 20, 2024, PCT / CN2025 / 086885, filed on April 2, 2025, and PCT / CN2025 / 125620, filed on September 30, 2025. The entire contents of the foregoing are incorporated herein by reference.TECHNICAL FIELD
[0003] This disclosure relates to multispecific anti-DLL3 (Delta-Like Ligand 3) / B7H3 (B7 Homolog 3) antibodies (e.g., bispecific antibodies or antigen-binding fragments thereof) , and antibody drug conjugates derived therefrom.BACKGROUND
[0004] A bispecific antibody is an artificial protein that can simultaneously bind to two different types of antigens or two different epitopes. This dual specificity opens up a wide range of applications, including redirecting T cells to tumor cells, dual targeting of different disease mediators, and delivering payloads to targeted sites. The approval of catumaxomab (anti-EpCAM and anti-CD3) and blinatumomab (anti-CD19 and anti-CD3) has become a major milestone in the development of bispecific antibodies.
[0005] As bispecific antibodies have various applications, there is a need to continue to develop various therapeutics based on bispecific antibodies.SUMMARY
[0006] This disclosure relates to anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof, wherein the antibodies or antigen-binding fragments thereof specifically bind to DLL3 and B7H3. In some embodiments, the antibodies or antigen-binding fragments thereof have identical light chain variable regions. In some embodiments, the antibodies or antigen-binding fragments thereof have a common light chain. The disclosure also relates to antibody drug conjugates derived from these anti-DLL3 / B7H3 antibodies.
[0007] In one aspect, the disclosure is related to an anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof, comprising: a first antigen-binding domain that specifically binds to DLL3; and a second antigen-binding domain that specifically binds to B7H3.
[0008] In some embodiments, the first antigen-binding domain comprises a first heavy chain variable region (VH1) and a first light chain variable region (VL1) ; and the second antigen-binding domain comprises a second heavy chain variable region (VH2) and a second light chain variable region (VL2) .
[0009] In some embodiments, the first heavy chain variable region (VH1) comprises complementarity determining regions (CDRs) 1, 2, and 3, wherein the VH1 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR1 amino acid sequence, the VH1 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR2 amino acid sequence, and the VH1 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR3 amino acid sequence; and
[0010] the first light chain variable region (VL1) comprises CDRs 1, 2, and 3, wherein the VL1 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR1 amino acid sequence, the VL1 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR2 amino acid sequence, and the VL1 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR3 amino acid sequence,
[0011] wherein the selected VH1 CDRs 1, 2, and 3 amino acid sequences, the selected VL1 CDRs 1, 2, and 3 amino acid sequences are one of the following:
[0012] (1) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0013] (2) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0014] (3) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; and
[0015] (4) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.
[0016] In some embodiments, the second heavy chain variable region (VH2) comprises CDRs 1, 2, and 3, wherein the VH2 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR1 amino acid sequence, the VH2 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR2 amino acid sequence, and the VH2 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR3 amino acid sequence; and
[0017] the second light chain variable region (VL2) comprises CDRs 1, 2, and 3, wherein the VL2 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR1 amino acid sequence, the VL2 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR2 amino acid sequence, and the VL2 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR3 amino acid sequence,
[0018] wherein the selected VH2 CDRs 1, 2, and 3 amino acid sequences, and the selected VL2 CDRs 1, 2, and 3 amino acid sequences are one of the following:
[0019] (1) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0020] (2) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0021] (3) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; and
[0022] (4) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.
[0023] In some embodiments,
[0024] (1) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0025] (2) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0026] (3) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0027] (4) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0028] (5) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0029] (6) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;
[0030] (7) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; or
[0031] (8) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.
[0032] In some embodiments, the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 29, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 31, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.
[0033] In some embodiments, the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 29, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 32, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.
[0034] In some embodiments, the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 30, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 31, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.
[0035] In some embodiments, the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 30, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 32, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.
[0036] In some embodiments, the VH1 comprises an amino acid sequence that is at least 90%identical to a selected VH sequence, and the VL1 comprises an amino acid sequence that is at least 90%identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
[0037] (1) the selected VH sequence is SEQ ID NO: 29, and the selected VL sequence is SEQ ID NO: 28; and
[0038] (2) the selected VH sequence is SEQ ID NO: 30, and the selected VL sequence is SEQ ID NO: 28.
[0039] In some embodiments, the VH1 comprises VH1 CDR1, VH1 CDR2, and VH1 CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence; and the VL1 comprising VL1 CDR1, VL1 CDR2, and VL1 CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
[0040] (1) the selected VH sequence is SEQ ID NO: 29, and the selected VL sequence is SEQ ID NO: 28; and
[0041] (2) the selected VH sequence is SEQ ID NO: 30, and the selected VL sequence is SEQ ID NO: 28.
[0042] In some embodiments, the VH2 comprises an amino acid sequence that is at least 90%identical to a selected VH sequence, and the VL2 comprises an amino acid sequence that is at least 90%identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
[0043] (1) the selected VH sequence is SEQ ID NO: 31, and the selected VL sequence is SEQ ID NO: 28; and
[0044] (2) the selected VH sequence is SEQ ID NO: 32, and the selected VL sequence is SEQ ID NO: 28.
[0045] In some embodiments, the VH2 comprises VH2 CDR1, VH2 CDR2, and VH2 CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence; and the VL2 comprising VL2 CDR1, VL2 CDR2, and VL2 CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:
[0046] (1) the selected VH sequence is SEQ ID NO: 31, and the selected VL sequence is SEQ ID NO: 28; and
[0047] (2) the selected VH sequence is SEQ ID NO: 32, and the selected VL sequence is SEQ ID NO: 28.
[0048] In some embodiments, the VH1 comprises the sequence of SEQ ID NO: 29 and the VL1 comprises the sequence of SEQ ID NO: 28.
[0049] In some embodiments, the VH1 comprises the sequence of SEQ ID NO: 30 and the VL1 comprises the sequence of SEQ ID NO: 28.
[0050] In some embodiments, the VH2 comprises the sequence of SEQ ID NO: 31 and the VL2 comprises the sequence of SEQ ID NO: 28.
[0051] In some embodiments, the VH2 comprises the sequence of SEQ ID NO: 32 and the VL2 comprises the sequence of SEQ ID NO: 28.
[0052] In some embodiments, the first antigen-binding domain specifically binds to human or monkey DLL3; and / or the second antigen-binding domain specifically binds to human or monkey B7H3.
[0053] In some embodiments, the first antigen-binding domain is human or humanized; and / or the second antigen-binding domain is human or humanized.
[0054] In some embodiments, the antibody is a multispecific antibody (e.g., a bispecific antibody) .
[0055] In some embodiments, the first antigen-binding domain is a single-chain variable fragment (scFv) ; and / or the second antigen-binding domain is a scFv.
[0056] In some embodiments, the first light chain variable region and the second light chain variable region are identical.
[0057] In one aspect, the disclosure is related to an anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof that cross-competes with the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein.
[0058] In one aspect, the disclosure is related to a nucleic acid comprising a polynucleotide encoding the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein.
[0059] In one aspect, the disclosure is related to a vector comprising the nucleic acid described herein.
[0060] In one aspect, the disclosure is related to a cell comprising the vector described herein.
[0061] In some embodiments, the cell is a CHO cell.
[0062] In one aspect, the disclosure is related to a cell comprising the nucleic acid described herein.
[0063] In one aspect, the disclosure is related to a method of producing an anti-DLL3 / B7H3 antibody or an antigen-binding fragment thereof, the method comprising
[0064] (a) culturing the cell described herein under conditions sufficient for the cell to produce the anti-DLL3 / B7H3 antibody or the antigen-binding fragment thereof; and
[0065] (b) collecting the anti-DLL3 / B7H3 antibody or the antigen-binding fragment thereof produced by the cell.
[0066] In one aspect, the disclosure is related to an anti-DLL3 / B7H3 antibody-drug conjugate (ADC) comprising a therapeutic agent covalently bound to the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein.
[0067] In some embodiments, the therapeutic agent is a cytotoxic or cytostatic agent.
[0068] In some embodiments, the therapeutic agent is MMAE or MMAF.
[0069] In some embodiments, the therapeutic agent is selected from
[0070] In some embodiments, the therapeutic agent is linked to the antibody or antigen-binding fragment thereof via a linker. In some embodiments, the linker has a structure of:
[0071] In some embodiments, the antibody-drug conjugate has a structure of:
[0072] in some embodiments, n=1-8; in some embodiments, “Ab” represents the antibody or antigen-binding fragment thereof.
[0073] In some embodiments, the drug-to-antibody ratio (DAR) is about 4 or 8.
[0074] In one aspect, the disclosure is related to a method of treating a subject having cancer, the method comprising administering a therapeutically effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein, or the anti-DLL3 / B7H3 antibody-drug conjugate described herein, to the subject.
[0075] In some embodiments, the subject has a cancer expressing DLL3 and / or B7H3 (e.g., both DLL3 and B7H3) .
[0076] In some embodiments, the cancer is neuroendocrine cancer, epidermoid carcinoma, liver cancer, pancreatic cancer, prostate cancer, osteosarcoma, breast cancer, colorectal cancer, stomach cancer, ovarian cancer, endometrial cancer, oral squamous cell carcinoma, cervical cancer, small cell lung cancer (SCLC) , non-small cell lung cancer (NSCLC) , bladder cancer, renal cancer, brain cancer, head and neck cancer, or melanoma.
[0077] In some embodiments, the subject is a human.
[0078] In one aspect, the disclosure is related to a method of decreasing the rate of tumor growth, the method comprising contacting a tumor cell with an effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein, or the anti-DLL3 / B7H3 antibody-drug conjugate described herein.
[0079] In one aspect, the disclosure is related to a method of killing a tumor cell, the method comprising contacting a tumor cell with an effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein, or the anti-DLL3 / B7H3 antibody-drug conjugate described herein.
[0080] In one aspect, the disclosure is related to a pharmaceutical composition comprising a pharmaceutically acceptable carrier and
[0081] (a) the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof described herein, and / or
[0082] (b) the anti-DLL3 / B7H3 antibody-drug conjugate described herein.
[0083] In one aspect, the disclosure is related to an anti-DLL3 / B7H3 antibody-drug conjugate (ADC) comprising a therapeutic agent covalently bound to a bispecific antibody or antigen-binding fragment thereof comprising: a first antigen-binding domain that specifically binds to DLL3; and a second antigen-binding domain that specifically binds to B7H3.
[0084] As used herein, the term “antigen-binding domain” refers to one or more protein domain (s) (e.g., formed from amino acids from a single polypeptide or formed from amino acids from two or more polypeptides (e.g., the same or different polypeptides) ) that is capable of specifically binding to one or more different antigen (s) (e.g., an effector antigen or control antigen) . In some examples, an antigen-binding domain can bind to an antigen or epitope with specificity and affinity similar to that of naturally-occurring antibodies. In some embodiments, the antigen-binding domain can be an antibody or a fragment thereof. One example of an antigen-binding domain is an antigen-binding domain formed by a VH-VL dimer. In some embodiments, an antigen-binding domain can include an alternative scaffold. In some embodiments, the antigen-binding domain is a VHH. Non-limiting examples of antigen-binding domains are described herein. Additional examples of antigen-binding domains are known in the art. In some examples, an antigen-binding domain can bind to a single antigen (e.g., one of an effector antigen and a control antigen) . In other examples, an antigen-binding domain can bind to two different antigens (e.g., an effector antigen and a control antigen) .
[0085] The term “antibody” is used herein in its broadest sense and includes certain types of immunoglobulin molecules that include one or more antigen-binding domains that specifically bind to an antigen or epitope. An antibody specifically includes, e.g., intact antibodies (e.g., intact immunoglobulins) , antibody fragments, bispecific antibodies, and multispecific antibodies. One example of an antibody is a protein complex that includes two heavy chains and two light chains. Additional examples of an antibody are described herein.
[0086] As used herein, the term “multispecific antibody” is an antibody that includes two or more different antigen-binding domains that collectively specifically bind two or more different epitopes. The two or more different epitopes may be epitopes on the same antigen (e.g., a single polypeptide present on the surface of a cell) or on different antigens (e.g., different proteins present on the surface of the same cell or present on the surface of different cells) . In some aspects, a multispecific antibody binds two different epitopes (i.e., a “bispecific antibody” ) . In some aspects, a multispecific antibody binds three different epitopes (i.e., a “trispecific antibody” ) . In some aspects, a multispecific antibody binds four different epitopes (i.e., a “quadspecific antibody” ) . In some aspects, a multispecific antibody binds five different epitopes (i.e., a “quintspecific antibody” ) . Each binding specificity may be present in any suitable valency. Non-limiting examples of multispecific antibodies are described herein.
[0087] As used herein, the term “bispecific antibody” refers to an antibody that binds to two different epitopes. The epitopes can be on the same antigen or on different antigens.
[0088] As used herein, the term “common light chain” refers to a light chain that can interact with two or more different heavy chains, forming different antigen-binding sites, wherein these different antigen-binding sites can specifically bind to different antigens or epitopes. Similarly, the term “common light chain variable region” refers to a light chain variable region that can interact with two or more different heavy chain variable regions, forming different antigen-binding sites, wherein these different antigen-binding sites can specifically bind to different antigens or epitopes. In some embodiments, the antibody or antigen-binding fragment thereof can have a common light chain. In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof can have a common light chain variable region.
[0089] As used herein, the term “anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof” refers to an antibody or antigen-binding fragment that binds to both DLL3 and B7H3.
[0090] Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Methods and materials are described herein for use in the present invention; other, suitable methods and materials known in the art can also be used. The materials, methods, and examples are illustrative only and not intended to be limiting. All publications, patent applications, patents, sequences, database entries, and other references mentioned herein are incorporated by reference in their entirety. In case of conflict, the present specification, including definitions, will control.
[0091] Other features and advantages of the invention will be apparent from the following detailed description and figures, and from the claims.DESCRIPTION OF DRAWINGS
[0092] FIG. 1 lists heavy chain variable region and light variable region CDR sequences of anti-DLL3 antigen binding domain (2A2 and 2BL2) and anti-B7H3 antigen binding domain (20H8 and 21A9) in anti-DLL3 / B7H3 antibodies as defined by Kabat definition.
[0093] FIG. 2 lists heavy chain variable region and light variable region CDR sequences of anti-DLL3 antigen binding domain (2A2 and 2BL2) and anti-B7H3 antigen binding domain (20H8 and 21A9) in anti-DLL3 / B7H3 antibodies as defined by Chothia definition.
[0094] FIG. 3 lists certain amino acid sequences discussed in the disclosure.
[0095] FIG. 4 shows the average tumor volumes in different groups of B-NDG mice that were injected with A-431 cells, and were treated with phosphate buffer saline (PBS) or ADCs.
[0096] FIG. 5 shows the average tumor volumes in different groups of B-NDG mice that were injected with NCI-H1975 cells, and were treated with phosphate buffer saline (PBS) or ADCs.
[0097] FIG. 6 shows the average tumor volumes in different groups of B-NDG mice that were injected with SHP-77 cells, and were treated with phosphate buffer saline (PBS) or ADCs.
[0098] FIG. 7 shows the average tumor volumes in different groups of B-NDG mice that were injected with NCI-H69 cells, and were treated with phosphate buffer saline (PBS) or ADCs.
[0099] FIG. 8 shows the internalization results of antibodies in DMS79 (A and B) and NCI-H69 (C and D) .
[0100] FIG. 9 shows the average tumor volumes in different groups of B-NDG mice that were injected with NCI-H524 cells, and were treated with phosphate buffer saline (PBS) or ADCs.
[0101] FIG. 10 shows the average tumor volumes in different groups of B-NDG mice that were engrafted with patient-derived lung tumor fragments (2 mm×2 mm×2 mm) , and were treated with PBS or ADCs.
[0102] FIG. 11 shows the average tumor volumes in different groups of B-NDG mice that were engrafted with patient-derived breast tumor fragments (2 mm×2 mm×2 mm) , and were treated with PBS or ADCs.
[0103] FIG. 12 shows the average tumor volumes in different groups of B-NDG mice that were injected with NCI-H69 cells, and were treated with phosphate buffer saline (PBS) or ADCs.DETAILED DESCRIPTION
[0104] A bispecific antibody or antigen-binding fragment thereof is an artificial protein that can simultaneously bind to two different epitopes (e.g., on two different antigens) . In some embodiments, a bispecific antibody or antigen-binding fragment thereof can have two arms. Each arm can have one heavy chain variable region and one light chain variable region, forming an antigen-binding domain (or an antigen-binding region) . In some embodiments, the bispecific antibody has a common light chain.
[0105] The present disclosure relates to anti-DLL3 / B7H3 antibodies (e.g., bispecific antibodies or antigen-binding fragments thereof) that specifically bind to DLL3 and B7H3, and antibody drug conjugates derived from these anti-DLL3 / B7H3 antibodies.
[0106] Anti-DLL3 / B7H3 Antibody
[0107] The Notch pathway is a highly conserved cell signaling pathway that is implicated in malignant transformation, cell proliferation, cycle arrest, and apoptosis, epithelial to mesenchymal transition, and suppression of neuroendocrine differentiation. The Notch signaling pathway is initiated by the binding of one of five ligands (Jagged 1 (Jag 1) , Jag 2, DLL1, DLL3, DLL4) with one of four receptors (Notch 1-4) . The DLL family of proteins interact with EGF repeats on Notch receptors on cell membranes, triggering Notch signaling. In canonical Notch signaling, ligand binding results in the intracellular cleavage of the receptor by metalloproteases, and the Notch intracellular domain then translocates into the nucleus and modulates transcription ofNotch-responsive genes. Notch signaling can be oncogenic or tumor suppressive depending on the cellular context. DLL1 has a tumor-suppressive role in lung cancer and is poorly expressed in the bone marrow of patients with lung cancer. In contrast, DLL1 has an oncogenic role in breast cancer, and its overexpression is associated with a poorer prognosis. DLL4 has an oncogenic role in a range of cancers. DLL3 is a noncanonical inhibitory ligand of the Notch receptor that is involved in poorly differentiated neuroendocrine carcinomas (NEC) and well-differentiated neuroendocrine tumors (NET) tumorigenesis. DLL3 is thought to inhibit Notch signaling in cis; it does not bind or activate Notch receptors when presented in trans. In normal tissues, DLL3 is generally expressed at low levels (if at all) and confined to the cytoplasm. It regulates Notch signaling by preventing the localization ofNotch receptors to the cell surface and redirecting them to the endosomes for degradation.
[0108] DLL3 expression is regulated by achaete-scute complex homolog 1 (ASCL1) , a transcription factor that dictates neuroendocrine cell fate and whose expression correlates with tumor-initiating cell capacity. Upregulation of ASCL1 in RB1-mutated high-grade pulmonary NEC (SCLC and LCNEC (large-cell NEC) ) was associated with DLL3 overexpression compared with normal tissues. ASCL1 expression in SCLC is associated with DLL3 but negatively associated with Notch expression. DLL3 is expressed on the surface of tumor cells, in addition to having cytoplasmic localization. By modulating Notch1, DLL3 promotes migration and invasion in SCLC. Conversely, Notch pathway activation was associated with low neuroendocrine differentiation and increased intrinsic tumor immunity in SCLC cells. Both ASCL1 and DLL3 are highly expressed in NEPC. These were among the most differentially expressed Notch signaling genes in neuroendocrine prostate cancers (NEPC) cells compared with adenocarcinoma, localized prostate adenocarcinoma, or benign cells. Additionally, upregulated DLL3 expression in patients with gastrointestinal or bladder / urinary tract NECs was strongly associated with ASCL1 expression. Notch2 and DLL3 were upregulated in patients with invasive versus non-invasive growth hormone–producing pituitary adenoma.
[0109] A detailed description of DLL3 and its functions can be found, e.g., in Yao J, et al., DLL3 as an Emerging Target for the Treatment ofNeuroendocrine Neoplasms. Oncologist. 2022 Nov 3; 27 (11) : 940-951; and Cortinovis DL, et al., Harnessing DLL3 inhibition: From old promises to new therapeutic horizons. Front Med. 2022 Dec 1; 9: 989405; each of which is incorporated by reference in its entirety.
[0110] B7 Homolog 3 (B7-H3; also known as CD276, Cluster of Differentiation 276, B7RP-2, or 4Ig-B7-H3) is a type I transmembrane protein encoded by chromosome 9 in mice and chromosome 15 in humans. The extracellular domain is composed of a single pair of immunoglobulin variable domain and immunoglobulin constant domain in mice (2Ig-B7-H3 isoform) and two identical pairs in human (4Ig-B7-H3 isoform) due to exon duplication. The intracellular tail of B7-H3 is short and has no known signaling motif. B7-H3 was first described in humans and then in mice, but is universally expressed among species. A soluble form, cleaved from the surface of activated T cell, monocyte, or DCs by a matrix metallopeptidase MMP or produced through alternative splicing of the intron, is also detectable in human sera. Soluble CD276 can activate the NF-κB signaling pathway to enhance the invasion and metastasis of pancreatic cancer cells. In addition, the level of soluble CD276 in the pleural effusion of patients with non-small cell lung cancer is significantly higher than that of healthy people. Thus, CD276 can be used as a diagnostic and prognostic indicator for related tumors.
[0111] B7-H3 is expressed on many tissues and cell types. At the mRNA level, it is ubiquitously found in non-lymphoid and lymphoid organs as liver, heart, prostate, spleen and thymus. Despite broad mRNA expression, protein expression is limited at steady state, suggesting the presence of an important post-transcriptional control mechanism. B7-H3 is constitutively found on non-immune resting fibroblasts, endothelial cells (EC) , osteoblasts, and amniotic fluid stem cells. Moreover, B7-H3 expression is induced on immune cells, specifically antigen-presenting cells. In particular, coculture with regulatory T cells (Treg) , IFN-γ, lipopolysaccharide (LPS) , or anti-CD40 in vitro stimulation all induce the expression of B7-H3 on dendritic cells (DCs) . Monocytes and monocytes-derived DCs upregulate B7-H3 after LPS stimulation or cytokine-induced differentiation respectively. Additionally, B7-H3 is also detected on natural killer (NK) cells, B cells, and a minor population of T cells following PMA / ionomycin stimulation.
[0112] The B7-H3 pathway has a dual role in contributing to the regulation of innate immune responses. One study found that neuroblastoma cells express B7-H3 on their cell surface, which protect them from NK cell-mediated lysis. Another group argues that B7-H3 co-stimulates innate immunity by augmenting pro-inflammatory cytokines release from LPS-stimulated monocytes / macrophages, in both a Toll-like receptor 4-and 2-dependent manner.
[0113] B7-H3 plays an important role in T cell-mediated adaptive immunity, although the nature of its signaling remains controversial. A co-stimulatory role of B7-H3 on human T cells was initially reported in vitro. Murine studies showing B7-H3 worsens experimental autoimmune encephalomyelitis (EAE) , arthritis, bacterial meningitis and chronic allograft rejection supported this claim. However, subsequent studies have mostly shown that B7-H3 acts as a T cell co-inhibitor. B7-H3 inhibits polyclonal or allogeneic CD4+and CD8+T cell activation, proliferation and effector cytokine production (IFN-γand IL-2) in mice and humans. This negative regulation of T cells is associated with diminished NFAT, NF-kB and AP-1 transcriptional factor activity. Independent studies utilizing either protein blockade or gene-knockout mice have reported that B7-H3 ameliorates graft-versus-host-disease, prolongs cardiac allograft survival, reduces airway hypersensitivity, and delays EAE onset, especially by down-regulating Th1 responses. These examples lend more credence to the co-inhibitory nature of B7-H3.
[0114] The receptor (s) for B7-H3 has yet to be discovered. Nevertheless, the crystal structure of mouse B7-H3 reveals that its receptor engagement on T cells involves the particular segment connecting F and G strands (the FG loop) of the immunoglobulin variable domain of B7-H3. Moreover, B7-H3 crystallizes as a glycosylated monomer but also undergoes an unusual dimerization in vitro. Altogether, the nature of the receptor (s) , differences in cellular context, and various disease models certainly account for the discrepancies in the function of the B7-H3 pathway in regulating both innate and adaptive immunity during homeostasis and inflammation.
[0115] Beyond the immune system, the B7-H3 pathway has a non-immunological role in promoting osteoblastic differentiation and bone mineralization in mice, ensuring normal bone formation. Indeed, B7-H3 knockout mice had reduced bone mineral density and were more susceptible to bone fractures compared to wild-type mice. Furthermore, similar to other immune checkpoints of the B7-CD28 pathways, B7-H3 is also expressed in human cancers and participates in tumorigenesis through modulation of both immune and non-immune related pathways.
[0116] A detailed description of CD276 and its function can be found, e.g., in Picarda, E. et al., "Molecular pathways: targeting B7-H3 (CD276) for human cancer immunotherapy. " Clinical Cancer Research 22.14 (2016) : 3425-3431; Collins, M. et al., "The B7 family of immune-regulatory ligands. " Genome Biology 6.6 (2005) : 1-7; Castellanos, J. R. et al., "B7-H3 role in the immune landscape of cancer. " American Journal of Clinical and Experimental Immunology 6.4 (2017) : 66; and Yang, S. et al., "B7-H3, a checkpoint molecule, as a target for cancer immunotherapy. " International Journal of Biological Sciences 16.11 (2020) : 1767; each of which is incorporated by reference in its entirety.
[0117] In some embodiments, the bispecific anti-DLL3 / B7H3 antibody described herein can be designed to have an IgG1 subtype structure with knobs-into-holes (KIH) mutations, which can promote heterodimerization and avoid mispairing between the two heavy chains. In some embodiments, the bispecific anti-DLL3 / B7H3 antibody has a higher endocytosis rate than the corresponding monoclonal antibodies or the control bispecific antibodies.
[0118] In some embodiments, the bispecific anti-DLL3 / B7H3 antibody described herein can be conjugated with a therapeutic agent, forming an antibody drug conjugate (ADC) . In some embodiments, the drug-to-antibody ratio (DAR) of the ADCs described herein is about 3.8, about 3.9, about 4.0, about 4.1, about 4.2, about 4.3, about 4.4, about 4.5, about 4.6, or about 4.7. In some embodiments, the DAR of the ADCs described herein is about 3.5 to about 4.5, about 3.6 about 4.5, about 3.7 to about 4.5, about 3.8 to about 4.5, about 3.9 to about 4.5, about 4.0 to about 4.5, about 4.1 to about 4.5, about 4.2 to about 4.5, about 4.3 to about 4.5, about 4.4 to about 4.5, about 3.5 to about 4.4, about 3.6 to about 4.4, about 3.7 to about 4.4, about 3.8 to about 4.4, about 3.9 to about 4.4, about 4.0 to about 4.4, about 4.1 to about 4.4, about 4.2 to about 4.4, about 4.3 to about 4.4, about 3.5 to about 4.3, about 3.6 to about 4.3, about 3.7 to about 4.3, about 3.8 to about 4.3, about 3.9 to about 4.3, about 4.0 to about 4.3, about 4.1 to about 4.3, about 4.2 to about 4.3, about 3.5 to about 4.2, about 3.6 to about 4.2, about 3.7 to about 4.2, about 3.8 to about 4.2, about 3.9 to about 4.2, about 4.0 to about 4.2, about 4.1 to about 4.2, about 3.5 to about 4.1, about 3.6 to about 4.1, about 3.7 to about 4.1, about 3.8 to about 4.1, about 3.9 to about 4.1, about 4.0 to about 4.1, about 3.5 to about 4.0, about 3.6 to about 4.0, about 3.7 to about 4.0, about 3.8 to about 4.0, about 3.9 to about 4.0, about 3.5 to about 3.9, about 3.6 to about 3.9, about 3.7 to about 3.9, about 3.8 to about 3.9, about 3.5 to about 3.8, about 3.6 to about 3.8, about 3.7 to about 3.8, about 3.5 to about 3.7, about 3.6 to about 3.7, or about 3.5 to about 3.6. In some embodiments, the DAR of the ADCs described herein is about 7.5 to about 8.5, about 7.6 to about 8.5, about 7.7 to about 8.5, about 7.8 to about 8.5, about 7.9 to about 8.5, about 8.0 to about 8.5, about 8.1 to about 8.5, about 8.2 to about 8.5, about 8.3 to about 8.5, about 8.4 to about 8.5, about 7.5 to about 8.4, about 7.6 to about 8.4, about 7.7 to about 8.4, about 7.8 to about 8.4, about 7.9 to about 8.4, about 8.0 to about 8.4, about 8.1 to about 8.4, about 8.2 to about 8.4, about 8.3 to about 8.4, about 7.5 to about 8.3, about 7.6 to about 8.3, about 7.7 to about 8.3, about 7.8 to about 8.3, about 7.9 to about 8.3, about 8.0 to about 8.3, about 8.1 to about 8.3, about 8.2 to about 8.3, about 7.5 to about 8.2, about 7.6 to about 8.2, about 7.7 to about 8.2, about 7.8 to about 8.2, about 7.9 to about 8.2, about 8.0 to about 8.2, about 8.1 to about 8.2, about 7.5 to about 8.1, about 7.6 to about 8.1, about 7.7 to about 8.1, about 7.8 to about 8.1, about 7.9 to about 8.1, about 8.0 to about 8.1, about 7.5 to about 8.0, about 7.6 to about 8.0, about 7.7 to about 8.0, about 7.8 to about 8.0, about 7.9 to about 8.0, about 7.5 to about 7.9, about 7.6 to about 7.9, about 7.7 to about 7.9, about 7.8 to about 7.9, about 7.5 to about 7.8, about 7.6 to about 7.8, about 7.7 to about 7.8, about 7.5 to about 7.7, about 7.6 to about 7.7, or about 7.5 to about 7.6.
[0119] In some embodiments, the anti-DLL3 / B7H3 ADC described herein can effectively inhibit in vitro cancer cell growth at a concentration of less than 10μg / mL, less than 3.33μg / mL, less than 1.11μg / mL, less than 0.37μg / mL, less than 0.12μg / mL, less than 0.04μg / mL, or less than 0.01μg / mL. In some embodiments, the anti-DLL3 / B7H3 ADC described herein can inhibit in vivo cancer cell growth (e.g., lung cancer, gastric cancer, or skin cancer) in a xenograft mouse model at a dose level of less than 10 mg / kg, 9 mg / kg, 8 mg / kg, 7 mg / kg, 6 mg / kg, 5 mg / kg, 4 mg / kg, 3 mg / kg, 2 mg / kg, or 1 mg / kg.
[0120] In some embodiments, the anti-DLL3 / B7H3 antibody described herein has a common light chain. In some embodiments, the anti-DLL3 / B7H3 antibody includes an anti-DLL3 antigen-binding domain (e.g., 2A2, 2BL2) or an anti-B7H3 antigen-binding domain (e.g., 20H8, 21A9) . In some embodiments, the anti-DLL3 / B7H3 antibodies have a heavy chain variable region targeting DLL3 (e.g., any one of the VH targeting DLL3 described herein) , a heavy chain variable region targeting B7H3 (e.g., any one of the VH targeting B7H3 described herein) , and two identical common light chain variable regions.
[0121] The CDR sequences for 2A2 antigen-binding domain include CDRs of the heavy chain variable domain, SEQ ID NOs: 4-6, and CDRs of the light chain variable domain, SEQ ID NOs: 1-3 as defined by Kabat definition. The CDRs can also be defined by Chothia definition. Under the Chothia definition, the CDR sequences of the heavy chain variable domain are set forth in SEQ ID NOs: 16-18, and CDR sequences of the light chain variable domain are set forth in SEQ ID NOs: 1-3. The human light chain variable region and human heavy chain variable region for 2A2 are shown in SEQ ID NO: 29 and SEQ ID NO: 28, respectively.
[0122] The CDR sequences for 2BL2 antigen-binding domain include CDRs of the heavy chain variable domain, SEQ ID NOs: 7-9, and CDRs of the light chain variable domain, SEQ ID NOs: 1-3 as defined by Kabat definition. The CDRs can also be defined by Chothia definition. Under the Chothia definition, the CDR sequences of the heavy chain variable domain are set forth in SEQ ID NOs: 19-21, and CDR sequences of the light chain variable domain are set forth in SEQ ID NOs: 1-3. The human light chain variable region and human heavy chain variable region for 2BL2 are shown in SEQ ID NO: 30 and SEQ ID NO: 28, respectively.
[0123] The CDR sequences for 20H8 antigen-binding domain include CDRs of the heavy chain variable domain, SEQ ID NOs: 10-12, and CDRs of the light chain variable domain, SEQ ID NOs: 1-3 as defined by Kabat definition. The CDRs can also be defined by Chothia definition. Under the Chothia definition, the CDR sequences of the heavy chain variable domain are set forth in SEQ ID NOs: 22-24, and CDR sequences of the light chain variable domain are set forth in SEQ ID NOs: 1-3. The human light chain variable region and human heavy chain variable region for 20H8 are shown in SEQ ID NO: 31 and SEQ ID NO: 28, respectively.
[0124] The CDR sequences for 21A9 antigen-binding domain include CDRs of the heavy chain variable domain, SEQ ID NOs: 13-15, and CDRs of the light chain variable domain, SEQ ID NOs: 1-3 as defined by Kabat definition. The CDRs can also be defined by Chothia definition. Under the Chothia definition, the CDR sequences of the heavy chain variable domain are set forth in SEQ ID NOs: 25-27, and CDR sequences of the light chain variable domain are set forth in SEQ ID NOs: 1-3. The human light chain variable region and human heavy chain variable region for 21A9 are shown in SEQ ID NO: 32 and SEQ ID NO: 28, respectively.
[0125] In some embodiments, the anti-DLL3 / B7H3 antibodies described herein can contain one, two, or three heavy chain variable region CDRs selected from the group of SEQ ID NOs: 4-6, SEQ ID NOs: 7-9, SEQ ID NOs: 10-12, SEQ ID NOs: 13-15, SEQ ID NOs: 16-18, SEQ ID NOs: 19-21, SEQ ID NOs: 22-24, and SEQ ID NOs: 25-27; and / or one, two, or three light chain variable region CDRs set forth in SEQ ID NOs: 1-3.
[0126] In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can have a heavy chain variable region (VH) comprising complementarity determining regions (CDRs) 1, 2, 3, wherein the CDR1 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VH CDR1 amino acid sequence, the CDR2 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VH CDR2 amino acid sequence, and the CDR3 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VH CDR3 amino acid sequence, and a light chain variable region (VL) comprising CDRs 1, 2, 3, wherein the CDR1 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VL CDR1 amino acid sequence, the CDR2 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VL CDR2 amino acid sequence, and the CDR3 region comprises or consists of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VL CDR3 amino acid sequence. The selected VH CDRs 1, 2, 3 amino acid sequences and the selected VL CDRs 1, 2, 3 amino acid sequences are shown in FIG. 1 and FIG. 2.
[0127] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 4 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 5 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 6 with zero, one or two amino acid insertions, deletions, or substitutions.
[0128] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 7 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 8 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 9 with zero, one or two amino acid insertions, deletions, or substitutions.
[0129] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 10 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 11 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 12 with zero, one or two amino acid insertions, deletions, or substitutions.
[0130] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 13 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 14 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 15 with zero, one or two amino acid insertions, deletions, or substitutions.
[0131] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 16 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 17 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 18 with zero, one or two amino acid insertions, deletions, or substitutions.
[0132] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 19 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 20 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 21 with zero, one or two amino acid insertions, deletions, or substitutions.
[0133] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 22 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 23 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 24 with zero, one or two amino acid insertions, deletions, or substitutions.
[0134] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a heavy chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 25 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 26 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 27 with zero, one or two amino acid insertions, deletions, or substitutions.
[0135] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment described herein can contain a light chain variable domain containing one, two, or three of the CDRs of SEQ ID NO: 1 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 2 with zero, one or two amino acid insertions, deletions, or substitutions; SEQ ID NO: 3 with zero, one or two amino acid insertions, deletions, or substitutions.
[0136] The insertions, deletions, and substitutions can be within the CDR sequence, or at one or both terminal ends of the CDR sequence.
[0137] In some embodiments, the anti-DLL3 / B7H3 antibodies contain a heavy chain variable region (VH) comprising or consisting of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VH sequence, and a light chain variable region (VL) comprising or consisting of an amino acid sequence that is at least 80%, 85%, 90%, or 95%identical to a selected VL sequence. In some embodiments, the selected VH sequence is SEQ ID NO: 29, 30, 31, or 32, and the selected VL sequence is SEQ ID NO: 28.
[0138] In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment can have 3 VH CDRs that are identical to the CDRs of any VH sequences as described herein. In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment can have 3 VL CDRs that are identical to the CDRs of any VL sequences as described herein.
[0139] The disclosure also provides nucleic acid comprising a polynucleotide encoding an anti-DLL3 / B7H3 antibody. The immunoglobulin heavy chain or immunoglobulin light chain in the anti-DLL3 / B7H3 antibody comprises CDRs as shown in FIG. 1, FIG. 2, or FIG. 3. When the polypeptides are paired with corresponding polypeptide (e.g., a corresponding heavy chain variable region or a corresponding light chain variable region) , the paired polypeptides bind to DLL3 and / or B7H3.
[0140] The anti-DLL3 / B7H3 antibodies can also be anti-DLL3 / B7H3 antibody variants (including derivatives and conjugates) of anti-DLL3 / B7H3 antibodies or antibody fragments. Additional anti-DLL3 / B7H3 antibodies provided herein are polyclonal, monoclonal, multispecific (multimeric, e.g., bispecific) , human antibodies, chimeric antibodies (e.g., human-mouse chimera) , single-chain antibodies, intracellularly-made antibodies (i.e., intrabodies) , and antigen-binding fragments thereof. The anti-DLL3 / B7H3 antibodies can be of any type (e.g., IgG, IgE, IgM, IgD, IgA, and IgY) , class (e.g., IgG1, IgG2, IgG3, IgG4, IgA1, and IgA2) , or subclass. In some embodiments, the anti-DLL3 / B7H3 antibody or antigen-binding fragment is an IgG (e.g., IgG1) antibody or antigen-binding fragment thereof.
[0141] Fragments of anti-DLL3 / B7H3 antibodies are suitable for use in the methods provided so long as they retain the desired affinity and specificity to both DLL3 and B7H3. Thus, a fragment of an anti-DLL3 / B7H3 antibody will retain an ability to bind to DLL3 and B7H3.
[0142] Antibodies and Antigen Binding Fragments thereof
[0143] In some embodiments, the multispecific anti-DLL3 / B7H3 antibody (e.g., bispecific antibody) includes an antigen-binding domain that is derived from an anti-DLL3 antibody, and an antigen-binding domain that is derived from an anti-B7H3 antibody. These anti-DLL3 / B7H3 antibodies and antigen-binding fragments thereof can have various forms.
[0144] In general, antibodies (also called immunoglobulins) can be made up of two classes of polypeptide chains, light chains and heavy chains. A non-limiting anti-DLL3 / B7H3 antibody of the present disclosure can be an intact, four immunoglobulin chain antibody comprising two heavy chains and two light chains. The heavy chain of the anti-DLL3 / B7H3 antibody can be of any isotype including IgM, IgG, IgE, IgA, or IgD or sub-isotype including IgG1, IgG2, IgG2a, IgG2b, IgG3, IgG4, IgE1, IgE2, etc. The light chain can be a kappa light chain or a lambda light chain.
[0145] The hypervariable regions, known as the complementary determining regions (CDRs) , form loops that comprise the principle antigen binding surface of the antibody. The four framework regions largely adopt a beta-sheet conformation and the CDRs form loops connecting, and in some cases forming part of, the beta-sheet structure. The CDRs in each chain are held in close proximity by the framework regions and, with the CDRs from the other chain, contribute to the formation of the antigen-binding domain.
[0146] Methods for identifying the CDR regions of an antibody by analyzing the amino acid sequence of the antibody are well known, and a number of definitions of the CDRs are commonly used. The Kabat definition is based on sequence variability, and the Chothia definition is based on the location of the structural loop regions. These methods and definitions are described in, e.g., Martin, "Protein sequence and structure analysis of antibody variable domains, " Antibody engineering, Springer Berlin Heidelberg, 2001. 422-439; Abhinandan, et al., "Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains, " Molecular immunology 45.14 (2008) : 3832-3839; Wu, T.T. and Kabat, E.A. (1970) J. Exp. Med. 132: 211-250; Martin et al., Methods Enzymol. 203: 121-53 (1991) ; Morea et al., Biophys Chem. 68 (1-3) : 9-16 (Oct. 1997) ; Morea et al., J Mol Biol. 275 (2) : 269-94 (Jan. 1998) ; Chothia et al., Nature 342 (6252) : 877-83 (Dec. 1989) ; Ponomarenko and Bourne, BMC Structural Biology 7: 64 (2007) ; each of which is incorporated herein by reference in its entirety.
[0147] The CDRs are important for recognizing an epitope of an antigen. As used herein, an “epitope” is the smallest portion of a target molecule capable of being specifically bound by the antigen-binding domain of an antibody. The minimal size of an epitope may be about three, four, five, six, or seven amino acids, but these amino acids need not be in a consecutive linear sequence of the antigen’s primary structure, as the epitope may depend on an antigen’s three-dimensional configuration based on the antigen’s secondary and tertiary structure.
[0148] In some embodiments, the anti-DLL3 / B7H3 antibody is an intact immunoglobulin molecule (e.g., IgG1, IgG2a, IgG2b, IgG3, IgM, IgD, IgE, IgA) . The IgG subclasses (IgG1, IgG2, IgG3, and IgG4) are highly conserved, differ in their constant region, particularly in their hinges and upper CH2 domains. The sequences and differences of the IgG subclasses are known in the art, and are described, e.g., in Vidarsson, et al, "IgG subclasses and allotypes: from structure to effector functions. " Frontiers in immunology 5 (2014) ; Irani, et al., "Molecular properties of human IgG subclasses and their implications for designing therapeutic monoclonal antibodies against infectious diseases. " Molecular immunology 67.2 (2015) : 171-182; Shakib, Farouk, ed. The human IgG subclasses: molecular analysis of structure, function and regulation. Elsevier, 2016; each of which is incorporated herein by reference in its entirety.
[0149] The anti-DLL3 / B7H3 antibody can also be an immunoglobulin molecule that is derived from any species (e.g., human, rodent, mouse, rat, camelid) . The antigen-binding domain or antigen binding fragment is a portion of an antibody that retains specific binding activity of the intact antibody, i.e., any portion of an antibody that is capable of specific binding to an epitope on the intact antibody’s target molecule. It includes, e.g., Fab, Fab’ , F (ab’ ) 2, and variants of these fragments. Thus, in some embodiments, an anti-DLL3 / B7H3 antibody or antigen binding fragment thereof can comprise e.g., a scFv, a Fv, a Fd, a dAb, a bispecific antibody, a bispecific scFv, a diabody, a linear antibody, a single-chain antibody molecule, a multispecific antibody formed from antibody fragments, and any polypeptide that includes a binding domain which is, or is homologous to, an antibody binding domain. Non-limiting examples of antigen-binding domains include, e.g., the heavy chain and / or light chain CDRs of an intact antibody, the heavy and / or light chain variable regions of an intact antibody, full length heavy or light chains of an intact antibody, or an individual CDR from either the heavy chain or the light chain of an intact antibody.
[0150] In some embodiments, the scFv in an anti-DLL3 / B7H3 antibody has two heavy chain variable domains, and two light chain variable domains. In some embodiments, the anti-DLL3 / B7H3 scFv has two antigen binding regions, and the two antigen binding regions can bind to the respective target antigens with different affinities.
[0151] In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can comprises one, two, or three heavy chain variable region CDRs selected from FIG. 1 and FIG. 2.
[0152] In some embodiments, the anti-DLL3 / B7H3 antibodies described herein can be conjugated to a therapeutic agent. The anti-DLL3 / B7H3 antibody-drug conjugate comprising the antibody or antigen-binding fragment thereof can covalently or non-covalently bind to a therapeutic agent. In some embodiments, the therapeutic agent is a cytotoxic or cytostatic agent (e.g., monomethyl auristatin E, monomethyl auristatin F, cytochalasin B, gramicidin D, ethidium bromide, emetine, mitomycin, etoposide, tenoposide, vincristine, vinblastine, colchicin, doxorubicin, daunorubicin, dihydroxy anthracin, maytansinoids such as DM-1 and DM-4, dione, mitoxantrone, mithramycin, actinomycin D, 1-dehydrotestosterone, glucocorticoids, procaine, tetracaine, lidocaine, propranolol, puromycin, epirubicin, and cyclophosphamide and analogs) . In some embodiments, the therapeutic agent is MMAE or MMAF. In some embodiments, the therapeutic agent is conjugated via a linker, e.g., a VC linker. Details of the linkers used for ADCs can be found, e.g., in Su, Z. et al., "Antibody–drug conjugates: Recent advances in linker chemistry. " Acta Pharmaceutica Sinica B (2021) , which is incorporated herein by reference in its entirety.
[0153] In some embodiments, the anti-DLL3 / B7H3 antibody is a bispecific antibody. Bispecific antibodies can be made by engineering the interface between a pair of antibody molecules to maximize the percentage of heterodimers that are recovered from recombinant cell culture. For example, the interface can contain at least a part of the CH3 domain of an antibody constant domain. In this method, one or more small amino acid side chains from the interface of the first antibody molecule are replaced with larger side chains (e.g., tyrosine or tryptophan) . Compensatory “cavities” of identical or similar size to the large side chain (s) are created on the interface of the second antibody molecule by replacing large amino acid side chains with smaller ones (e.g., alanine or threonine) . This provides a mechanism for increasing the yield of the heterodimer over other unwanted end-products such as homodimers. This method is described, e.g., in WO 96 / 27011, which is incorporated by reference in its entirety.
[0154] Any of the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof described herein may be conjugated to a stabilizing molecule (e.g., a molecule that increases the half-life of the antibody or antigen-binding fragment thereof in a subject or in solution) . Non-limiting examples of stabilizing molecules include: a polymer (e.g., a polyethylene glycol) or a protein (e.g., serum albumin, such as human serum albumin) . The conjugation of a stabilizing molecule can increase the half-life or extend the biological activity of an anti-DLL3 / B7H3 antibody or an antigen-binding fragment in vitro (e.g., in tissue culture or when stored as a pharmaceutical composition) or in vivo (e.g., in a human) .
[0155] The anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can also have various forms. Many different formats of bispecific antibodies or antigen-binding fragments thereof are known in the art, and are described e.g., in Suurs, et al., "A review of bispecific antibodies and antibody constructs in oncology and clinical challenges, " Pharmacology&therapeutics (2019) , which is incorporated herein by reference in the entirety.
[0156] In some embodiments, the anti-DLL3 / B7H3 antibody is a BiTe, a (scFv) 2, a nanobody, a nanobody-HSA, a DART, a TandAb, a scDiabody, a scDiabody-CH3, scFv-CH-CL-scFv, a HSAbody, scDiabody-HAS, or a tandem-scFv. In some embodiments, the anti-DLL3 / B7H3 antibody is a VHH-scAb, a VHH-Fab, a Dual scFab, a F (ab’ ) 2, a diabody, a crossMab, a DAF (two-in-one) , a DAF (four-in-one) , a DutaMab, a DT-IgG, a knobs-in-holes common light chain, a knobs-in-holes assembly, a charge pair, a Fab-arm exchange, a SEEDbody, a LUZ-Y, a Fcab, aκλ-body, an orthogonal Fab, a DVD-IgG, a IgG (H) -scFv, a scFv- (H) IgG, IgG (L) -scFv, scFv- (L) IgG, IgG (L, H) -Fv, IgG (H) -V, V (H) -IgG, IgG (L) -V, V (L) -IgG, KIH IgG-scFab, 2scFv-IgG, IgG-2scFv, scFv4-Ig, Zybody, DVI-IgG, Diabody-CH3, a triple body, aminiantibody, a minibody, a TriBi minibody, scFv-CH3 KIH, Fab-scFv, a F (ab’ ) 2-scFv2, a scFv-KIH, a Fab-scFv-Fc, a tetravalent HCAb, a scDiabody-Fc, a Diabody-Fc, a tandem scFv-Fc, an Intrabody, a dock and lock, a lmmTAC, an IgG-IgG conjugate, a Cov-X-Body, or a scFv1-PEG-scFv2.
[0157] In some embodiments, the anti-DLL3 / B7H3 antibody can be a TrioMab. In a TrioMab, the two heavy chains are from different species, wherein different sequences restrict the heavy-light chain pairing.
[0158] In some embodiments, the anti-DLL3 / B7H3 antibody has two different heavy chains and one common light chain. Heterodimerization of heavy chains can be based on the knobs-into-holes or some other heavy chain pairing technique.
[0159] In some embodiments, CrossMAb technique can be used produce bispecific anti-DLL3 / B7H3 antibodies. CrossMAb technique can be used enforce correct light chain association in bispecific heterodimeric IgG antibodies, this technique allows the generation of various bispecific antibody formats, including bi- (1+1) , tri- (2+1) and tetra- (2+2) valent bispecific antibodies, as well as non-Fc tandem antigen-binding fragment (Fab) -based antibodies. These formats can be derived from any existing antibody pair using domain crossover, without the need for the identification of common light chains, post-translational processing / in vitro chemical assembly or the introduction of a set of mutations enforcing correct light chain association. The method is described in Klein et al., "The use of CrossMAb technology for the generation of bi-and multispecific antibodies. " MAbs. Vol. 8. No. 6. Taylor&Francis, 2016, which is incorporated by reference in its entirety. In some embodiments, the CH1 in the heavy chain and the CL domain in the light chain are swapped.
[0160] The anti-DLL3 / B7H3 antibody can be a Duobody. The Fab-exchange mechanism naturally occurring in IgG4 antibodies is mimicked in a controlled matter in IgG1 antibodies, a mechanism called controlled Fab exchange. This format can ensure specific pairing between the heavy-light chains.
[0161] In Dual-variable-domain antibody (DVD-Ig) , additional VH and variable light chain (VL) domain are added to each N-terminus for bispecific targeting. This format resembles the IgG-scFv, but the added binding domains are bound individually to their respective N-termini instead of a scFv to each heavy chain N-terminus.
[0162] In scFv-IgG, the two scFv are connected to the C-terminus of the heavy chain (CH3) . The scFv-IgG format has two different bivalent binding sites and is consequently also called tetravalent. There are no heavy-chain and light-chain pairing problem in the scFv-IgG.
[0163] In some embodiments, the anti-DLL3 / B7H3 antibody can have an IgG-IgG format. Two intact IgG antibodies are conjugated by chemically linking the C-terminals of the heavy chains.
[0164] The anti-DLL3 / B7H3 antibody can also have a Fab-scFv-Fc format. In Fab-scFv-Fc format, alight chain, heavy chain and a third chain containing the Fc region and the scFv are assembled. It can ensure efficient manufacturing and purification.
[0165] In some embodiments, the anti-DLL3 / B7H3 antibody can be a TF. Three Fab fragments are linked by disulfide bridges. Two fragments target the tumor associated antigen (TAA) and one fragment targets a hapten. The TF format does not have an Fc region.
[0166] ADAPTIR has two scFvs bound to each side of an Fc region. It abandons the intact IgG as a basis for its construct, but conserves the Fc region to extend the half-life and facilitate purification.
[0167] Dual affinity retargeting (DART) has two peptide chains connecting the opposite fragments, thus VLA with VHB and VLB with VHA, and a sulfur bond at their C-termini fusing them together. In DART, the sulfur bond can improve stability over BiTEs.
[0168] In DART-Fc, an Fc region is attached to the DART structure. It can be generated by assembling three chains, two via a disulfide bond, as with the DART. One chain contains half of the Fc region which will dimerize with the third chain, only expressing the Fc region. The addition of Fc region enhances half-life leading to longer effective concentrations, avoiding continuous IV.
[0169] In tetravalent DART, four peptide chains are assembled. Basically, two DART molecules are created with half an Fc region and will dimerize. This format has bivalent binding to both targets, thus it is a tetravalent molecule.
[0170] Tandem diabody (TandAb) comprises two diabodies. Each diabody consists of an VHA and VLB fragment and a VHA and VLB fragment that are covalently associated. The two diabodies are linked with a peptide chain. It can improve stability over the diabody consisting of two scFvs. It has two bivalent binding sites.
[0171] The ScFv-scFv-toxin includes toxin and two scFv with a stabilizing linker. It can be used for specific delivery of payload.
[0172] In some embodiments, the anti-DLL3 / B7H3 antibody is a bispecific antibody. In some embodiments, the bispecific antibody in present disclosure is designed to be 1+1 (monovalent for each target) and has an IgG1 subtype structure. This can reduce the avidity to cells with low expression levels of DLL3 and B7H3, and increase the avidity to cells that co-express DLL3 and B7H3, to achieve enhanced targeting function.
[0173] In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof have a light chain constant region that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%or 100%identical to SEQ ID NO: 33, and a heavy chain constant region that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%or 100%identical to any one of SEQ ID NOs: 34 and 35.
[0174] In some embodiments, the anti-DLL3 / B7H3 antibodies include KIH mutations. In some embodiments, the anti-DLL3 / B7H3 antibody includes a first antigen-binding domain that specifically binds to DLL3, and a second antigen-binding domain that specifically binds to B7H3. In some embodiments, the first antigen-binding domain includes a heavy chain that including one or more knob mutations (a knob heavy chain) , and the second antigen-binding domain includes a heavy chain including one or more hole mutations (a hole heavy chain) . In some embodiments, the first antigen-binding domain includes a heavy chain that including one or more hole mutations (a hole heavy chain) , and the second antigen-binding domain includes a heavy chain including one or more knob mutations (a knob heavy chain) . In some embodiments, the anti-DLL3 / B7H3 antibody includes a knob heavy chain comprising a constant region that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%or 100%identical to SEQ ID NO: 34. In some embodiments, the anti-DLL3 / B7H3 antibody includes a hole heavy chain comprising a constant region that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%or 100%identical to SEQ ID NO: 35.
[0175] Antibody Characteristics
[0176] The anti-DLL3 / B7H3 antibodies can include an anti-DLL3 antigen-binding domain and any anti-B7H3 antigen-binding domain as described herein.
[0177] The disclosure provides anti-DLL3 / B7H3 antibodies and antigen-binding fragments thereof that can specifically bind to DLL3. These anti-DLL3 / B7H3 antibodies can be agonists or antagonists. The anti-DLL3 / B7H3 antibodies, or antigen-binding fragments thereof described herein can bind to DLL3, and block the binding between DLL3 and its ligands. By blocking the binding between DLL3 and its ligands, the anti-DLL3 / B7H3 antibodies can inhibit the DLL3-associated signaling pathway and thus treating cancer. In some embodiments, the anti-DLL3 / B7H3 antibodies, or antigen-binding fragments thereof can initiate CDC or ADCC.
[0178] General techniques can be used to measure the affinity of an antibody for an antigen include, e.g., ELISA, RIA, and surface plasmon resonance (SPR) . Affinities can be deduced from the quotient of the kinetic rate constants (KD=koff / kon) . In some implementations, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can bind to DLL3 (e.g., human DLL3, monkey DLL3, mouse DLL3, and / or chimeric DLL3) with a dissociation rate (koff) of less than 0.1 s-1, less than 0.01 s-1, less than 0.001 s-1, less than 0.0001 s-1, or less than 0.00001 s-1. In some embodiments, the dissociation rate (koff) is greater than 0.01 s-1, greater than 0.001 s-1, greater than 0.0001 s-1, greater than 0.00001 s-1, or greater than 0.000001 s-1.
[0179] In some embodiments, kinetic association rates (kon) is greater than 1 x 102 / Ms, greater than 1 x 103 / Ms, greater than 1 x 104 / Ms, greater than 1 x 105 / Ms, or greater than 1 x 106 / Ms. In some embodiments, kinetic association rates (kon) is less than 1 x 105 / Ms, less than 1 x 106 / Ms, or less than 1 x 107 / Ms.
[0180] In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can bind to DLL3 (e.g., human DLL3, monkey DLL3, and / or chimeric DLL3) with a KD of less than 1 x 10-6 M, less than 1 x 10-7M, less than 1 x 10-8 M, less than 1 x 10-9 M, or less than 1 x 10-10 M. In some embodiments, the KD is less than 50 nM, 40 nM, 30 nM, 20 nM, 10 nM, 9 nM, 8 nM, 7 nM, 6 nM, 5 nM, 4 nM, 3 nM, 2 nM, or 1 nM. In some embodiments, KD is greater than 1 x 10-7M, greater than 1 x 10-8M, greater than 1 x 10-9 M, or greater than 1 x 10-10 M.
[0181] The anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can also include an antigen-binding domain that can specifically bind to B7H3. These antibodies can be agonists or antagonists. In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof described herein can increase immune response. In some embodiments, these antibodies can block B7H3 activity, e.g., inhibit tumor cells invasion or metastasis and the stimulation of immune cells. In some embodiments, the anti-DLL3 / B7H3 antibodies, or antigen-binding fragments thereof can initiate CDC or ADCC.
[0182] In some implementations, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can bind to B7H3 (e.g., human B7H3, monkey B7H3, and / or chimeric B7H3) with a dissociation rate (koff) of less than 0.1 s-1, less than 0.01 s-1, less than 0.001 s-1, less than 0.0001 s-1, or less than 0.00001 s-1. In some embodiments, the dissociation rate (koff) is greater than 0.01 s-1, greater than 0.001 s-1, greater than 0.0001 s-1, greater than 0.00001 s-1, or greater than 0.000001 s-1.
[0183] In some embodiments, kinetic association rates (kon) is greater than 1 x 102 / Ms, greater than 1 x 103 / Ms, greater than 1 x 104 / Ms, greater than 1 x 105 / Ms, or greater than 1 x 106 / Ms. In some embodiments, kinetic association rates (kon) is less than 1 x 105 / Ms, less than 1 x 106 / Ms, or less than 1 x 107 / Ms.
[0184] Affinities can be deduced from the quotient of the kinetic rate constants (KD=koff / kon) . In some embodiments, KD is less than 1 x 10-6M, less than 1 x 10-7M, less than 1 x 10-8 M, less than 1 x 10-9 M, or less than 1 x 10-10 M. In some embodiments, the KD is less than 50 nM, 40 nM, 30 nM, 20 nM, 15 nM, 10 nM, 9 nM, 8 nM, 7 nM, 6 nM, 5 nM, 4 nM, 3 nM, 2 nM, or 1 nM. In some embodiments, KD is greater than 1 x 10-7M, greater than 1 x 10-8M, greater than 1 x 10-9 M, or greater than 1 x 10-10 M.
[0185] Because the anti-DLL3 / B7H3 antibody (e.g., bispecific antibody) binds to both DLL3 and B7H3, for cells that express both DLL3 and B7H3, the antibody has a higher binding affinity to these cells. Avidity can be used to measure the binding affinity of an antibody to these cells. Avidity is the accumulated strength of multiple affinities of individual non-covalent binding interactions.
[0186] In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can bind to human B7H3 or monkey B7H3. In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof cannot bind to human B7H3 or monkey B7H3. In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof can bind to human DLL3 or monkey DLL3. In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof cannot bind to human DLL3 or monkey DLL3.
[0187] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has an endocytosis rate in cells that is at least 50%, 60%, 70%, 72.5%, 75%, 77.5%, 80%, 82.5%, 85%, 87.5%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%. In some embodiments, the endocytosis rate that is less than 50%, 60%, 70%, 72.5%, 75%, 77.5%, 80%, 82.5%, 85%, 87.5%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%.
[0188] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a purity that is greater than 30%, 40%, 50%, 60%, 70%, 72.5%, 75%, 77.5%, 80%, 82.5%, 85%, 87.5%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%, e.g., as measured by HPLC. In some embodiments, the purity is less than 30%, 40%, 50%, 60%, 70%, 72.5%, 75%, 77.5%, 80%, 82.5%, 85%, 87.5%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%, e.g., as measured by HPLC.
[0189] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a purity of above 90%, above 91%, above 92%, above 93%, above 94%, above 95%, above 96%, above 97%, or above 98%, as determined by size exclusion chromatography (SEC) . In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a hydrophobic interaction chromatography (HIC) retention time that is longer than 2 minutes, longer than 3 minutes, longer than 4 minutes, or longer than 5 minutes. In some embodiments, the HIC retention time is less than 2 minutes, less than 3 minutes, less than 4 minutes, less than 5 minutes, or less than 6 minutes.
[0190] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a purity of above 85%, above 86%, above 87%, above 88%, above 89%, above 90%, above 91%, above 92%, above 93%, above 94%, above 95%, above 96%, above 97%, above 98%, or above 99%, as determined by capillary electrophoresis-sodium dodecyl sulphate (CE-SDS) .
[0191] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a main peak that constitutes more than 40%, more than 50%, more than 55%, more than 60%, more than 65%, more than 70%, more than 75%, more than 80%, more than 85%, or more than 90%of the total sample, as determined by capillary isoelectric focusing (cIEF) . In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has an acidic peak that constitutes less than 10%, less than 15%, less than 20%, less than 25%, less than 30%, less than 35%, less than 40%, less than 45%, less than 50%, less than 55%, less than 60%, less than 65%, less than 70%, or less than 75%of the total sample, as determined by capillary isoelectric focusing (cIEF) .
[0192] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a tumor growth inhibition rate or percentage (TGI%) that is greater than 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 110%, 120%, 130%, 140%, 150%, 160%, 170%, 180%, 190%, or 200%. In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a tumor growth inhibition percentage that is less than 60%, 70%, 80%, 90%, 100%, 110%, 120%, 130%, 140%, or 150%. The TGI (%) can be determined, e.g., at 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, or 41 days after the treatment starts. As used herein, the tumor growth inhibition rate or percentage (TGI%) is calculated using the following formula: TGI (%) = [1- (Ti-T0) / (Vi-V0) ] ×100
[0193] Ti is the average tumor volume in the treatment group on day i. T0 is the average tumor volume in the treatment group on day zero. Vi is the average tumor volume in the control group on day i. V0 is the average tumor volume in the control group on day zero.
[0194] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC has a functional Fc region. In some embodiments, effector function of a functional Fc region is antibody-dependent cell-mediated cytotoxicity (ADCC) . In some embodiments, effector function of a functional Fc region is phagocytosis. In some embodiments, effector function of a functional Fc region is ADCC and phagocytosis. In some embodiments, the Fc region is human IgG1, human IgG2, human IgG3, or human IgG4.
[0195] In some embodiments, the anti-DLL3 / B7H3 antibody, antigen-binding fragment, or ADC does not have a functional Fc region. For example, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof are Fab, Fab’ , F (ab’ ) 2, and Fv fragments. In some embodiments, the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof as described herein have an Fc region without effector function. In some embodiments, the Fc is a human IgG4 Fc. In some embodiments, the Fc does not have a functional Fc region. For example, the Fc region has LALA mutations (L234A and L235A mutations in EU numbering) , or LALA-PG mutations (L234A, L235A, P329G mutations in EU numbering) .
[0196] Some other modifications to the Fc region can be made. For example, a cysteine residue (s) can be introduced into the Fc region, thereby allowing interchain disulfide bond formation in this region. The homodimeric fusion protein thus generated may have any increased half-life in vitro and / or in vivo.
[0197] In some embodiments, the IgG4 has S228P mutation (EU numbering) . The S228P mutation prevents in vivo and in vitro IgG4 Fab-arm exchange.
[0198] In some embodiments, Fc regions are provided having a carbohydrate structure that lacks fucose attached (directly or indirectly) to an Fc region. For example, the amount of fucose in such Fc region composition may be from 1%to 80%, from 1%to 65%, from 5%to 65%or from 20%to 40%. The amount of fucose is determined by calculating the average amount of fucose within the sugar chain at Asn297, relative to the sum of all glycostructures attached to Asn 297 (e.g. complex, hybrid and high mannose structures) as measured by MALDI-TOF mass spectrometry, as described in WO 2008 / 077546, for example. Asn297 refers to the asparagine residue located at about position 297 in the Fc region (Eu numbering of Fc region residues; or position 314 in Kabat numbering) ; however, Asn297 may also be located about±3 amino acids upstream or downstream of position 297, i.e., between positions 294 and 300, due to minor sequence variations in Fc region sequences. Such fucosylation variants may have improved ADCC function. In some embodiments, to reduce glycan heterogeneity, the Fc region can be further engineered to replace the Asparagine at position 297 with Alanine (N297A) .
[0199] In some embodiments, the main peak of HPLC-SEC accounts for at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, 99.5%, 100%of the protein complex described herein after purification by protein A-based affinity chromatography and / or size-exclusive chromatography.
[0200] In some embodiments, the bispecific anti-DLL3 / B7H3 antibody described herein has a higher endocytosis rate than the corresponding monoclonal antibodies and / or the positive control antibodies described herein.
[0201] Antibody Drug Conjugates (ADC)
[0202] The anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof described herein can be conjugated to a therapeutic agent (a drug) . The therapeutic agent can be covalently or non-covalently bind to the anti-DLL3 / B7H3 antibody. In some embodiments, the anti-DLL3 / B7H3 antibody is an anti-DLL3 / B7H3 bispecific antibody. In some embodiments, the bispecific antibody has a common light chain.
[0203] In some embodiments, the therapeutic agent is a cytotoxic or cytostatic agent (e.g., monomethyl auristatin E, monomethyl auristatin F, cytochalasin B, gramicidin D, ethidium bromide, emetine, mitomycin, etoposide, tenoposide, vincristine, vinblastine, colchicin, doxorubicin, daunorubicin, dihydroxy anthracin, maytansinoids such as DM-1 and DM-4, dione, mitoxantrone, mithramycin, actinomycin D, 1-dehydrotestosterone, glucocorticoids, procaine, tetracaine, lidocaine, propranolol, puromycin, epirubicin, and cyclophosphamide and analogs) . Useful classes of cytotoxic, cytostatic, or immunomodulatory agents include, for example, antitubulin agents, DNA minor groove binders, DNA replication inhibitors, and alkylating agents.
[0204] In some embodiments, the therapeutic agent can include, but not limited to, cytotoxic reagents, such as chemo-therapeutic agents, immunotherapeutic agents and the like, antiviral agents or antimicrobial agents. In some embodiments, the therapeutic agent to be conjugated can be selected from, but not limited to, MMAE (monomethyl auristatin E) , MMAD (monomethyl auristatin D) , or MMAF (monomethyl auristatin F) .
[0205] Definitions of specific functional groups and chemical terms are described in more detail below. For purpose of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75th Edition, inside cover, and specific functional groups are generally defined as described therein. Additionally, general principles of organic chemistry, as well as specific functional moieties and reactivity, are described in Organic Chemistry, Thomas Sorrell, University Science Books, Sausalito, 1999; Smith and March, March’s Advanced Organic Chemistry, 5th Edition, John Wiley&Sons, Inc., New York, 2001; Larock, Comprehensive Organic Transformations, VCH Publishers, Inc., New York, 1989; Carruthers, Some Modem Methods ofOrganic Synthesis, 3rd Edition, Cambridge University Press, Cambridge, 1987.
[0206] All ranges cited herein are inclusive, unless expressly stated to the contrary. When a range of values is listed, it is intended to encompass each value and sub-range within the range. For example, “C1-6” is intended to encompass, C1, C2, C3, C4, C5, C6, C1-6, C1-5, C1-4, C1-3, C1-2, C2-6, C2-5, C2-4, C2-3, C3-6, C3-5, C3-4, C4-6, C4-5, and C5-6.
[0207] The compounds or any formula depicting and describing the compounds of the present disclosure may have one or more chiral (asymmetric) centers. The present invention encompasses all stereoisomeric forms of the compounds or any formula depicting and describing the compounds of the present invention. Centers of asymmetry that are present in the compounds or any formula depicting and describing the compounds of the present invention can all independently of one another have (R) or (S) configuration. When bonds to a chiral carbon are depicted as straight lines in the structural formulas, or when a compound name is recited without an (R) or (S) chiral designation for a chiral carbon, it is understood that both the (R) and (S) configurations of each such chiral carbon, and hence each enantiomer or diastereomer and mixtures thereof, are embraced within the formula or by the name.
[0208] The disclosure includes all possible enantiomers and diastereomers and mixtures of two or more stereoisomers, for example mixtures of enantiomers and / or diastereomers, in all ratios. Thus, enantiomers are a subject of the disclosure in enantiomerically pure form, both as levorotatory and as dextrorotatory antipodes, in the form of racemates and in the form of mixtures of the two enantiomers in all ratios. In the case of a cis / trans isomerism the disclosure includes both the cis form and the trans form as well as mixtures of these forms in all ratios. The preparation of individual stereoisomers can be carried out, if desired, by separation of a mixture by customary methods, for example by chromatography or crystallization, by the use of stereochemically uniform starting materials for the synthesis or by stereoselective synthesis. Optionally a derivatization can be carried out before a separation of stereoisomers. The separation of a mixture of stereoisomers can be carried out at an intermediate step during the synthesis of a compound or it can be done on a final racemic product. Absolute stereochemistry may be determined by X-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing a stereogenic center of known configuration. Alternatively, absolute stereochemistry may be determined by Vibrational Circular Dichroism (VCD) spectroscopy analysis.
[0209] Unless otherwise stated, the structures depicted herein are also meant to include the compounds that differ only in the presence of one or more isotopically enriched atoms, in other words, the compounds wherein one or more atoms are replaced by atoms having the same atomic number, but an atomic mass or mass number different from the atomic mass or mass number which predominates in nature. Such compounds are referred to as a “isotopic variant” . The present disclosure is intended to include all pharmaceutically acceptable isotopic variants of the compounds or any formula depicting and describing the compounds of the present invention. Examples of isotopes suitable for inclusion in the compounds of the present invention include, but not limited to, isotopes of hydrogen, such as 2H (i.e., D) and3H; carbon, such as 11C, 13C, and 14C; chlorine, such as 36Cl; fluorine, such as 18F; iodine, such as 123I and 125I; nitrogen, such as 13N and 15N; oxygen, such as 15O, 17O, and 18O; phosphorus, such as 32P; and sulfur, such as 35S. Certain isotopic variants of the compounds or any formula depicting and describing the compounds of the present disclosure, for example those incorporating a radioactive isotope, may be useful in drug and / or substrate tissue distribution studies. Particularly, compounds having the depicted structures that differ only in the replacement with heavier isotopes, such as the replacement of hydrogen by deuterium (2H, or D) , can afford certain therapeutic advantages, for example, resulting from greater metabolic stability, increased in vivo half-life, or reduced dosage requirements and, hence, may be utilized in some particular circumstances. Isotopic variants of compounds or any formula depicting and describing the compounds of the present disclosure can generally be prepared by techniques known to those skilled in the art or by processes analogous to those described in the accompanying examples and synthesis using an appropriate isotopically-labeled reagent in place of the non-labeled reagent previously employed.
[0210] The compounds as provided herein are described with reference to both generic formulas and specific compounds. In addition, the compounds of the present disclosure may exist in a number of different forms or derivatives, all within the scope of the disclosure. These include, for example, pharmaceutically acceptable salts, tautomers, stereoisomers, racemic mixtures, regioisomers, prodrugs, solvated forms, different crystal forms or polymorphs, and active metabolites, etc.
[0211] As used herein, the term “pharmaceutically acceptable salt” , unless otherwise stated, includes salts that retain the biological effectiveness of the free acid / base form of the specified compound and that are not biologically or otherwise undesirable. Pharmaceutically acceptable salts may include salts formed with inorganic bases or acids and organic bases or acids. In cases where the compounds of the present disclosure contain one or more acidic or basic groups, the disclosure also comprises their corresponding pharmaceutically acceptable salts. Thus, the compounds of the present invention which contain acidic groups, such as carboxyl groups, can be present in salt form, and can be used according to the invention, for example, as alkali metal salts, alkaline earth metal salts, aluminum salts or as ammonium salts. More non-limiting examples of such salts include lithium salts, sodium salts, potassium salts, calcium salts, magnesium salts, barium salts, or salts with ammonia or organic amines such as ethylamine, ethanolamine, diethanolamine, triethanolamine, piperidine, N-methylglutamine, or amino acids. These salts are readily available, for instance, by reacting the compound having an acidic group with a suitable base, e.g., lithium hydroxide, sodium hydroxide, sodium propoxide, potassium hydroxide, potassium ethoxide, magnesium hydroxide, calcium hydroxide, or barium hydroxide. Other base salts of compounds of the present disclosure include but are not limited to copper (I) , copper (II) , iron (II) , iron (III) , manganese (II) , and zinc salts. Compounds of the present disclosure which contain one or more basic groups, e.g., groups which can be protonated, can be present in salt form, and can be used according to the disclosure in the form of their addition salts with inorganic or organic acids. Examples of suitable acids include hydrogen chloride, hydrogen bromide, hydrogen iodide, phosphoric acid, sulfuric acid, nitric acid, methanesulfonic acid, p-toluenesulfonic acid, naphthalenedisulfonic acid, sulfoacetic acid, trifluoroacetic acid, oxalic acid, acetic acid, tartaric acid, lactic acid, salicylic acid, benzoic acid, carbonic acid, formic acid, propionic acid, pivalic acid, diethylacetic acid, malonic acid, succinic acid, pimelic acid, fumaric acid, maleic acid, malic acid, embonic acid, mandelic acid, sulfaminic acid, phenylpropionic acid, gluconic acid, ascorbic acid, isonicotinic acid, citric acid, adipic acid, taurocholic acid, glutaric acid, stearic acid, glutamic acid, or aspartic acid, and other acids known to those skilled in the art. The salts which are formed are, inter alia, hydrochlorides, chlorides, hydrobromides, bromides, iodides, sulfates, phosphates, methanesulfonates (mesylates) , tosylates, carbonates, bicarbonates, formates, acetates, sulfoacetates, triflates, oxalates, malonates, maleates, succinates, tartrates, malates, embonates, mandelates, fumarates, lactates, citrates, glutarates, stearates, aspartates, and glutamates. The stoichiometry of the salts formed from the compounds of the disclosure may moreover be an integral or non-integral multiple of one.
[0212] Compounds of the present disclosure which contain basic nitrogen-containing groups can be quaternized using agents such as C1-4alkyl halides, for example, methyl, ethyl, isopropyl, and tert-butyl chloride, bromide, and iodide; diC1-4alkyl sulfates, for example, dimethyl, diethyl, and diamyl sulfate; C10-18alkyl halides, for example, decyl, dodecyl, lauryl, myristyl, and stearyl chloride, bromide, and iodide; and arylC1-4alkyl halides, for example, benzyl chloride and phenethyl bromide.
[0213] If the compounds of the present disclosure simultaneously contain acidic and basic groups in the molecule, the disclosure also includes, in addition to the salt forms mentioned, inner salts or betaines (zwitterions) . The respective salts can be obtained by customary methods which are known to those skilled in the art, for example by contacting these with an organic or inorganic acid or base in a solvent or dispersant, or by anion exchange or cation exchange with other salts. The present disclosure also includes all salts of the compounds of the present disclosure which, owing to low physiological compatibility, are not directly suitable for use in pharmaceuticals but which can be used, for example, as intermediates for chemical reactions or for the preparation of pharmaceutically acceptable salts. For a review on more suitable salts, see Stahl and Wermuth, Handbook ofPharmaceutical Salts: Properties, Selection, and Use (Wiley-VCH, 2002) .
[0214] The compound or any formula depicting and describing the compounds of the present disclosure and pharmaceutically acceptable salts thereof may exist in unsolvated and solvated forms. As used herein, the term “solvate” refers to a molecular complex comprising the compound of Formula (I) , or a pharmaceutically acceptable salt thereof, and one or more pharmaceutically acceptable solvent molecules. For example, the term “hydrate” is employed when the solvent is water.
[0215] Pharmaceutically acceptable solvates in accordance with the present disclosure may include those wherein the solvent of crystallization may be isotopically substituted, e.g., D2O, d6-acetone, d6-DMSO.
[0216] Linker (linking agent compound)
[0217] In some embodiments, the therapeutic agent is conjugated via a linker (or a linking agent compound) . As used herein, the term “linker” or “linking agent compound” refers to a compound that can connect a ligand (e.g., the antibodies or the antigen-binding fragments thereof described herein) and a therapeutic agent (e.g., any of the therapeutic agents described herein) together to form a ligand-drug conjugate by reacting with a group of the ligand compound and the therapeutic agent compound respectively by, for example, a coupling reaction.
[0218] In some embodiments, the linker described herein is a compound having the following formula:
[0219] Q-L
[0220] Formula (I) ,
[0221] or a pharmaceutically acceptable salt, solvate, stereoisomer, or isotopic variant thereof, wherein Q denotes to ajunction moiety capable of being coupled to a ligand via a bond selected from the group consisting of carbonyl, thioether, amide, disulfide and hydrazone bond; L denotes to a linker moiety capable of connecting Q to a therapeutic agent.
[0222] In some embodiments, the junction moiety (Q in Formula (I) ) has the following structure:
[0223] In some embodiments, the linker moiety (L in Formula (I) ) has the following formula:
[0224] where L1 is a polypeptide residue consisting of three to eight amino acid residues which comprises at least one amino acid residue with a side chain carboxyl group, for example, glutamic acid residue or aspartic acid residue, where “-COOH” denotes carboxyl group of an amino acid residue at C-terminal of the polypeptide residue;
[0225] L2 is absent or a monodentate, bidentate or tridentate hydrophilic group attached to the side chain carboxyl group on the amino acid residue of the polypeptide residue L1, and L2 has a structure of-NHC (RL2a) (RL2b) (RL2c) , where RL2a, RL2b, and RL2c are each independently selected from the group consisting of H, - (CH2O) (CH2CH2O) m (CH2) pC (O) OH, and- (CH2O) (CH2CH2O) m (CH2) pC (O) NHRL2d, RL2d is H or C1-6 alkyl optionally substituted with 1 to 6 hydroxy groups, each m is independently an integer from 0 to 10, preferably 0 to 4, for example 0, 1, 2, 3, or 4, especially preferably m is 0, and each p is independent an integer from 1 to 4, for example, 1, 2, 3, or 4; and
[0226] denotes to the N-terminal side of the polypeptide residue covalently attached to thejunction moiety Q.
[0227] In some embodiments, the polypeptide residue L1 is NH-Glu-Val-Ala-COOH. In some embodiments, the hydrophilic group L2has the following structure:
[0228] wherein “*” denotes the site covalently attached to polypeptide residue L1, e.g., side chain of the Glu residue in NH-Glu-Val-Ala-COOH.
[0229] In some embodiments, the linker described herein is a compound having the following structure:
[0230] In some embodiments, the linker is a VC linker. Details of the linkers used for ADCs can be found, e.g., in Su, Z. et al., "Antibody–drug conjugates: Recent advances in linker chemistry. " Acta Pharmaceutica Sinica B (2021) , which is incorporated herein by reference in its entirety.
[0231] Therapeutic agent
[0232] In some embodiments, the therapeutic agent that is conjugated to the antibodies or the antigen-binding fragments thereof described herein is discussed as follows.
[0233] In some embodiments, the therapeutic agent described herein is a cytotoxic agent. In some embodiments, the cytotoxic agent is a camptothecin compound, an analogue or a derivative thereof. In some preferred embodiments, the camptothecin compound is a compound having the following structure:
[0234] wherein X is selected from the group consisting of-CH2-, O and S; Y is selected from the group consisting of H, D, and F.
[0235] In some embodiments, the therapeutic agent is CPT-1. The structure of CPT-1 is shown below:
[0236] In some embodiments, the therapeutic agent is CPT-2. The structure of CPT-2 is shown below:
[0237] In some embodiments, the therapeutic agent is CPT3. The structure of CPT-3 is shown below:
[0238] In some embodiments, the therapeutic agent is CPT-4. The structure of CPT-4 is shown below:
[0239] In some embodiments, the therapeutic agent is an auristatin, such as auristatin E (also known in the art as a derivative of dolastatin-10) or a derivative thereof. The auristatin can be, for example, an ester formed between auristatin E and a keto acid. For example, auristatin E can be reacted with paraacetyl benzoic acid or benzoylvaleric acid to produce AEB and AEVB, respectively. Other typical auristatins include AFP, MMAF, and MMAE. The synthesis and structure of exemplary auristatins are described in U.S. Patent Application Publication No. 2003-0083263; International Patent Publication No. WO 04 / 010957, International Patent Publication No. WO 02 / 088172, and U.S. Pat. Nos. 7,498,298, 6,884,869, 6,323,315; 6,239,104; 6,034,065; 5,780,588; 5,665,860; 5,663,149; 5,635,483; 5,599,902; 5,554,725; 5,530,097; 5,521,284; 5,504,191; 5,410,024; 5,138,036; 5,076,973; 4,986,988; 4,978,744; 4,879,278; 4,816,444; and 4,486,414, each of which is incorporated by reference herein in its entirety and for all purposes.
[0240] Auristatins have been shown to interfere with microtubule dynamics and nuclear and cellular division and have anticancer activity. Auristatins bind tubulin and can exert a cytotoxic or cytostatic effect on cancer cell. There are a number of different assays, known in the art, which can be used for determining whether an auristatin or resultant antibody-drug conjugate exerts a cytostatic or cytotoxic effect on a desired cell.
[0241] In some embodiments, the therapeutic agent is a chemotherapeutic agent. Examples of chemotherapeutic agents include alkylating agents such as thiotepa and cyclosphosphamide (CYTOXANTM) ; alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and methylamelamines including altretamine, triethylenemelamine, triethylenephosphoramide, triethylenethiophosphaoramide and trimethylolomelamine; nitrogen mustards such as chlorambucil, chlornaphazine, cholophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, ranimustine; antibiotics such as aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, calicheamicin, carabicin, carminomycin, carzinophilin, chromomycins, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo-L-norleucine, doxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5-fluorouracil (5-FU) ; folic acid analogues such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogs such as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine, 5-FU; androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals such as aminoglutethimide, mitotane, trilostane; folic acid replenisher such as frolinic acid; aceglatone; aldophosphamide glycoside; aminolevulinic acid; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elfornithine; elliptinium acetate; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidamine; mitoguazone; mitoxantrone; mopidamol; nitracrine; pentostatin; phenamet; pirarubicin; podophyllinic acid; 2-ethylhydrazide; procarbazine; PSK7; razoxane; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2’ , 2’ , 2’ -trichlorotriethylamine; urethan; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside ( “Ara-C” ) ; cyclophosphamide; taxanes, e.g. paclitaxel ( Bristol-Myers Squibb Oncology, Princeton, N. J. ) and doxetaxel ( Rhone-Poulenc Rorer, Antony, France) ; chlorambucil; gemcitabine; 6-thioguanine; platinum analogs such as cisplatin and carboplatin; vinblastine; platinum; etoposide (VP-16) ; ifosfamide; mitomycin C; mitoxantrone; vincristine; vinorelbine; navelbine; novantrone; teniposide; daunomycin; aminopterin; xeloda; ibandronate; CPT-11; topoisomerase inhibitor RFS 2000; difluoromethylornithine (DMFO) ; retinoic acid; esperamicins; capecitabine; and pharmaceutically acceptable salts, acids or derivatives of any of the above. Also included in this definition are anti-hormonal agents that act to regulate or inhibit hormone action on tumors such as anti-estrogens including for example tamoxifen, raloxifene, aromatase inhibiting 4 (5) -imidazoles, 4-hydroxytamoxifen, trioxifene, keoxifene, LY117018, onapristone, and toremifene (Fareston) ; and anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and goserelin; and pharmaceutically acceptable salts, acids or derivatives of any of the above. A detailed description of the chemotherapeutic agents can be found in, e.g., US20180193477A1, which is incorporated by reference in its entirety.
[0242] Linker-Therapeutic agent compound
[0243] In some embodiments, a linker (e.g., any of the linkers described herein) and a therapeutic agent (e.g., any of the therapeutic agents described herein) can be linked to form a “linker-therapeutic agent” compound.
[0244] In some embodiments, the linker-therapeutic agent compound has the following structure:
[0245] In some embodiments, the linker-therapeutic agent compound has the following structure:
[0246] In some embodiments, an antibody ( “Ab” ) , e.g., any of the antibodies or the antigen-binding fragments thereof described herein, can be linked to a linker-therapeutic agent compound (e.g., any of the linker-therapeutic agent compounds described herein) to generate an antibody-drug conjugate. In some embodiments, the antibody-drug conjugate has the following structure:
[0247] wherein n=1-8. In some embodiments, n=1-8. In some embodiments, n is about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8. In some embodiments, n is about 1-8, 1-7, 1-6, 1-5, 1-4, 1-3, 1-2, 2-8, 2-7, 2-6, 2-5, 2-4, 2-3, 3-8, 3-7, 3-6, 3-5, 3-4, 4-8, 4-7, 4-6, 4-5, 5-8, 5-7, 5-6, 6-8, 6-7, or 7-8. In some embodiments, n is an integral or non-integral multiple of one.
[0248] In some embodiments, the anti-DLL3 / B7H3 antibody is coupled to the drug via a cleavable linker e.g. a SPBD linker or a maleimidocaproyl-valine-citrulline-p-aminobenzyloxycarbonyl (VC) linker. In some embodiments, the anti-DLL3 / B7H3 antibody is coupled to the drug via a non-cleavable linker e.g. aMCC linker formed using SMCC or sulfo-SMCC. Selection of an appropriate linker for a given ADC can be readily made by the skilled person having knowledge of the art and taking into account relevant factors, such as the site of attachment to the anti-DLL3 / B7H3 antibody, any structural constraints of the drug and the hydrophobicity of the drug (see, for example, review in Nolting, Chapter 5, Antibody-Drug Conjugates: Methods in Molecular Biology, 2013, Ducry (Ed. ) , Springer) . A number of specific linker-toxin combinations have been described and may be used with the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof described herein to prepare ADCs in certain embodiments. Examples include, but are not limited to, cleavable peptide-based linkers with auristatins such as MMAE and MMAF, camptothecins such as SN-38, duocarmycins and PBD dimers; non-cleavable MC-based linkers with auristatins MMAF and MMAE; acid-labile hydrazone-based linkers with calicheamicins and doxorubicin; disulfide-based linkers with maytansinoids such as DM1 and DM4, and bis-maleimido-trioxyethylene glycol (BMPEO) -based linkers with maytansinoid DM1. Some these therapeutic agents and linkers are described, e.g., in Peters&Brown, (2015) Biosci. Rep. e00225; Dosio et al., (2014) Recent Patents on Anti-Cancer Drug Discovery 9: 35-65; US Patent Publication No. US 2015 / 0374847, and US20180193477A1; which are incorporated herein by reference in the entirety.
[0249] Depending on the desired drug and selected linker, those skilled in the art can select suitable method for coupling them together. For example, some conventional coupling methods, such as amine coupling methods, can be used to form the desired drug-linker complex which still contains reactive groups for conjugating to the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof through covalent linkage. In some embodiments, a drug-maleimide complex (i.e., maleimide linking drug) can be used for the payload bearing reactive group in the present disclosure. Most common reactive group capable of bonding to thiol group in ADC preparation is maleimide. Additionally, organic bromides, iodides also are frequently used.
[0250] The anti-DLL3 / B7H3 ADC can be prepared by one of several routes known in the art, employing organic chemistry reactions, conditions, and reagents known to those skilled in the art (see, for example, Bioconjugate Techniques (G.T. Hermanson, 2013, Academic Press) . For example, conjugation can be achieved by (1) reaction of a nucleophilic group or an electrophilic group of an antibody with a bivalent linker reagent, to form antibody-linker intermediate Ab-L, via a covalent bond, followed by reaction with an activated drug moiety D; or (2) reaction of a nucleophilic group or an electrophilic group of a drug moiety with a linker reagent, to form drug-linker intermediate D-L, via a covalent bond, followed by reaction with the nucleophilic group or an electrophilic group of an antibody. Conjugation methods (1) and (2) can be employed with a variety of antibodies, drug moieties, and linkers to prepare the anti-DLL3 / B7H3 ADCs described here. Various prepared linkers, linker components and toxins are commercially available or may be prepared using standard synthetic organic chemistry techniques. These methods are described e.g., in March’s Advanced Organic Chemistry (Smith&March, 2006, Sixth Ed., Wiley) ; Toki et al., (2002) J. Org. Chem. 67: 1866-1872; Frisch et al., (1997) Bioconj. Chem. 7: 180-186; Bioconjugate Techniques (G.T. Hermanson, 2013, Academic Press) ; US20210379193A1, and US20180193477A1, which are incorporated herein by reference in the entirety. In addition, a number of pre-formed drug-linkers suitable for reaction with a selected anti-DLL3 / B7H3 antibody or antigen-binding fragment are also available commercially, for example, linker-toxins comprising DM1, DM4, MMAE, MMAF or Duocarmycin SA are available from Creative BioLabs (Shirley, N. Y. ) .
[0251] Several specific examples of methods of preparing anti-DLL3 / B7H3 ADCs are known in the art and are described in U.S. Pat. No. 8,624,003 (pot method) , U.S. Pat. No. 8,163,888 (one-step) , and U.S. Pat. No. 5,208,020 (two-step method) , and US20180193477A1, which are incorporated herein by reference in the entirety. Other methods are known in the art and include those described in Antibody-Drug Conjugates: Methods in Molecular Biology, 2013, Ducry (Ed. ) , Springer.
[0252] Drug loading is represented by the number of drug moieties per antibody in a molecule of ADC. For some antibody-drug conjugates, the drug loading may be limited by the number of attachment sites on the antibody. For example, where the attachment is a cysteine thiol, as in certain exemplary embodiments described herein, the drug loading may range from 0 to 8 drug moieties per antibody. In certain embodiments, higher drug loading, e.g. p≥5, may cause aggregation, insolubility, toxicity, or loss of cellular permeability of certain antibody-drug conjugates. In certain embodiments, the average drug loading for an anti-DLL3 / B7H3 antibody-drug conjugate ranges from 1 to about 8; from about 2 to about 6;or from about 3 to about 5. Indeed, it has been shown that for certain antibody-drug conjugates, the optimal ratio of drug moieties per antibody can be around 4. In some embodiments, the DAR for an anti-DLL3 / B7H3 ADC composition is about or at least 1, 2, 3, 4, 5, 6, 7, or 8. In some embodiments, the average DAR in the anti-DLL3 / B7H3 ADC composition is about 1~about 2, about 2~about 3, about 3~about 4, about 3~about 5, about 4~about 5, about 5~about 6, about 6~about 7, or about 7~about 8.
[0253] In some embodiments, anti-DLL3 / B7H3 antibody variants are provided having a carbohydrate structure that lacks fucose attached (directly or indirectly) to an Fc region. For example, the amount of fucose in such antibody may be from 1%to 80%, from 1%to 65%, from 5%to 65%or from 20%to 40%. The amount of fucose is determined by calculating the average amount of fucose within the sugar chain at Asn297, relative to the sum of all glycostructures attached to Asn 297 (e.g. complex, hybrid and high mannose structures) as measured by MALDI-TOF mass spectrometry, as described in WO 2008 / 077546, for example. Asn297 refers to the asparagine residue located at about position 297 in the Fc region (Eu numbering of Fc region residues; or position 314 in Kabat numbering) ; however, Asn297 may also be located about±3 amino acids upstream or downstream of position 297, i.e., between positions 294 and 300, due to minor sequence variations in antibodies. Such fucosylation variants may have improved ADCC function. In some embodiments, to reduce glycan heterogeneity, the Fc region of the anti-DLL3 / B7H3 antibody can be further engineered to replace the Asparagine at position 297 with Alanine (N297A) .
[0254] In some embodiments, to facilitate production efficiency by avoiding Fab-arm exchange, the Fc region of the anti-DLL3 / B7H3 antibodies or antigen-binding fragments thereof was further engineered to replace the serine at position 228 (EU numbering) of IgG4 with proline (S228P) . A detailed description regarding S228 mutation is described, e.g., in Silva et al., "The S228P mutation prevents in vivo and in vitro IgG4 Fab-arm exchange as demonstrated using a combination of novel quantitative immunoassays and physiological matrix preparation. " Journal of Biological Chemistry 290.9 (2015) : 5462-5469, which is incorporated by reference in its entirety.
[0255] In some embodiments, the methods described here are designed to make a bispecific anti-DLL3 / B7H3 antibody. Bispecific anti-DLL3 / B7H3 antibodies can be made by engineering the interface between a pair of antibody molecules to maximize the percentage of heterodimers that are recovered from recombinant cell culture. For example, the interface can contain at least a part of the CH3 domain of an antibody constant domain. In this method, one or more small amino acid side chains from the interface of the first antibody molecule are replaced with larger side chains (e.g., tyrosine or tryptophan) . Compensatory “cavities” of identical or similar size to the large side chain (s) are created on the interface of the second antibody molecule by replacing large amino acid side chains with smaller ones (e.g., alanine or threonine) . This provides a mechanism for increasing the yield of the heterodimer over other unwanted end-products such as homodimers. This method is described, e.g., in WO 96 / 27011, which is incorporated by reference in its entirety.
[0256] In some embodiments, knobs-into-holes (KIH) technology can be used, which involves engineering CH3 domains to create either a “knob” or a “hole” in each heavy chain to promote heterodimerization. The KIH technique is described e.g., in Xu, Yiren, et al., "Production of bispecific antibodies in ‘knobs-into-holes’ using a cell-free expression system. " MAbs. Vol. 7. No. 1. Taylor&Francis, 2015, which is incorporated by reference in its entirety. In some embodiments, one heavy chain has a T366W, and / or S354C (knob) substitution (EU numbering) , and the other heavy chain has an Y349C, T366S, L368A, and / or Y407V (hole) substitution (EU numbering) . In some embodiments, one heavy chain has one or more of the following substitutions Y349C and T366W (EU numbering) . The other heavy chain can have one or more the following substitutions E356C, T366S, L368A, and Y407V (EU numbering) . Furthermore, a substitution (-ppcpScp->-ppcpPcp-) can also be introduced at the hinge regions of both substituted IgG.
[0257] Recombinant Vectors
[0258] The present disclosure also provides recombinant vectors (e.g., expression vectors) that include an isolated polynucleotide disclosed herein (e.g., a polynucleotide that encodes a polypeptide disclosed herein) , host cells into which are introduced the recombinant vectors (i.e., such that the host cells contain the polynucleotide and / or a vector comprising the polynucleotide) , and the production of anti-DLL3 / B7H3 antibody polypeptides or fragments thereof by recombinant techniques.
[0259] As used herein, a “vector” is any construct capable of delivering one or more polynucleotide (s) of interest to a host cell when the vector is introduced to the host cell. An “expression vector” is capable of delivering and expressing the one or more polynucleotide (s) of interest as an encoded polypeptide in a host cell into which the expression vector has been introduced. Thus, in an expression vector, the polynucleotide of interest is positioned for expression in the vector by being operably linked with regulatory elements such as a promoter, enhancer, and / or a poly-A tail, either within the vector or in the genome of the host cell at or near or flanking the integration site of the polynucleotide of interest such that the polynucleotide of interest will be translated in the host cell introduced with the expression vector.
[0260] A vector can be introduced into the host cell by methods known in the art, e.g., electroporation, chemical transfection (e.g., DEAE-dextran) , transformation, transfection, and infection and / or transduction (e.g., with recombinant virus) . Thus, non-limiting examples of vectors include viral vectors (which can be used to generate recombinant virus) , naked DNA or RNA, plasmids, cosmids, phage vectors, and DNA or RNA expression vectors associated with cationic condensing agents.
[0261] In some implementations, a polynucleotide disclosed herein (e.g., a polynucleotide that encodes a polypeptide disclosed herein) is introduced using a viral expression system (e.g., vaccinia or other pox virus, retrovirus, or adenovirus) , which may involve the use of a non-pathogenic (defective) , replication competent virus, or may use a replication defective virus. In the latter case, viral propagation generally will occur only in complementing virus packaging cells. Suitable systems are disclosed, for example, in Fisher-Hoch et al., 1989, Proc. Natl. Acad. Sci. USA 86: 317-321; Flexner et al., 1989, Ann. N.Y. Acad Sci. 569: 86-103; Flexner et al., 1990, Vaccine, 8: 17-21; U.S. Pat. Nos. 4,603,112, 4,769,330, and 5,017,487; WO 89 / 01973; U.S. Pat. No. 4,777,127; GB 2,200,651; EP 0,345,242; WO 91 / 02805; Berkner-Biotechniques, 6: 616-627, 1988; Rosenfeld et al., 1991, Science, 252: 431-434; Kolls et al., 1994, Proc. Natl. Acad. Sci. USA, 91: 215-219; Kass-Eisler et al., 1993, Proc. Natl. Acad. Sci. USA, 90: 11498-11502; Guzman et al., 1993, Circulation, 88: 2838-2848; and Guzman et al., 1993, Cir. Res., 73: 1202-1207. Techniques for incorporating DNA into such expression systems are well known to those of ordinary skill in the art. The DNA may also be “naked, ” as described, for example, in Ulmer et al., 1993, Science, 259: 1745-1749, and Cohen, 1993, Science, 259: 1691-1692. The uptake of naked DNA may be increased by coating the DNA onto biodegradable beads that are efficiently transported into the cells.
[0262] For expression, the DNA insert comprising a polypeptide-encoding polynucleotide disclosed herein can be operatively linked to an appropriate promoter (e.g., a heterologous promoter) , such as the phage lambda PL promoter, the E. coli lac, trp and tac promoters, the SV40 early and late promoters and promoters of retroviral LTRs, to name a few. Other suitable promoters are known to the skilled artisan. The expression constructs can further contain sites for transcription initiation, termination and, in the transcribed region, a ribosome binding site for translation. The coding portion of the mature transcripts expressed by the constructs may include a translation initiating at the beginning and a termination codon (UAA, UGA, or UAG) appropriately positioned at the end of the polypeptide to be translated.
[0263] As indicated, the expression vectors can include at least one selectable marker. Such markers include dihydrofolate reductase or neomycin resistance for eukaryotic cell culture and tetracycline or ampicillin resistance genes for culturing in E. coli and other bacteria. Representative examples of appropriate hosts include, but are not limited to, bacterial cells, such as E. coli, Streptomyces, and Salmonella typhimurium cells; fungal cells, such as yeast cells; insect cells such as Drosophila S2 and Spodoptera Sf9 cells; animal cells such as CHO, COS, Bowes melanoma, and HK 293 cells; and plant cells. Appropriate culture mediums and conditions for the host cells described herein are known in the art.
[0264] Non-limiting vectors for use in bacteria include pQE70, pQE60 and pQE-9, available from Qiagen; pBS vectors, Phagescript vectors, Bluescript vectors, pNH8A, pNH16a, pNH18A, pNH46A, available from Stratagene; and ptrc99a, pKK223-3, pKK233-3, pDR540, pRIT5 available from Pharmacia. Non-limiting eukaryotic vectors include pWLNEO, pSV2CAT, pOG44, pXT1 and pSG available from Stratagene; and pSVK3, pBPV, pMSG and pSVL available from Pharmacia. Other suitable vectors will be readily apparent to the skilled artisan.
[0265] Non-limiting bacterial promoters suitable for use include the E. coli lacI and lacZ promoters, the T3 and T7 promoters, the gpt promoter, the lambda PR and PL promoters and the trp promoter. Suitable eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, the early and late SV40 promoters, the promoters ofretroviral LTRs, such as those of the Rous sarcoma virus (RSV) , and metallothionein promoters, such as the mouse metallothionein-I promoter.
[0266] In the yeast Saccharomyces cerevisiae, a number of vectors containing constitutive or inducible promoters such as alpha factor, alcohol oxidase, and PGH may be used. For reviews, see Ausubel et al. (1989) Current Protocols in Molecular Biology, John Wiley&Sons, New York, N.Y, and Grant et al., Methods Enzymol., 153: 516-544 (1997) .
[0267] Introduction of the construct into the host cell can be effected by calcium phosphate transfection, DEAE-dextran mediated transfection, cationic lipid-mediated transfection, electroporation, transduction, infection or other methods. Such methods are described in many standard laboratory manuals, such as Davis et al., Basic Methods In Molecular Biology (1986) , which is incorporated herein by reference in its entirety.
[0268] Transcription of DNA encoding an anti-DLL3 / B7H3 antibody of the present disclosure by higher eukaryotes may be increased by inserting an enhancer sequence into the vector. Enhancers are cis-acting elements of DNA, usually about from 10 to 300 bp that act to increase transcriptional activity of a promoter in a given host cell-type. Examples of enhancers include the SV40 enhancer, which is located on the late side of the replication origin at base pairs 100 to 270, the cytomegalovirus early promoter enhancer, the polyoma enhancer on the late side of the replication origin, and adenovirus enhancers.
[0269] For secretion of the translated protein into the lumen of the endoplasmic reticulum, into the periplasmic space or into the extracellular environment, appropriate secretion signals may be incorporated into the expressed polypeptide. The signals may be endogenous to the polypeptide or they may be heterologous signals.
[0270] The polypeptide (e.g., an anti-DLL3 / B7H3 antibody) can be expressed in a modified form, such as a fusion protein (e.g., a GST-fusion) or with a histidine-tag, and may include not only secretion signals, but also additional heterologous functional regions. For instance, a region of additional amino acids, particularly charged amino acids, may be added to the N-terminus of the polypeptide to improve stability and persistence in the host cell, during purification, or during subsequent handling and storage. Also, peptide moieties can be added to the polypeptide to facilitate purification. Such regions can be removed prior to final preparation of the polypeptide. The addition of peptide moieties to polypeptides to engender secretion or excretion, to improve stability and to facilitate purification, among others, are familiar and routine techniques in the art.
[0271] The disclosure also provides a nucleic acid sequence that is at least 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%identical to any nucleotide sequence as described herein, and an amino acid sequence that is at least 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%identical to any amino acid sequence as described herein.
[0272] The disclosure also provides a nucleic acid sequence that has a homology of at least 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%to any nucleotide sequence as described herein, and an amino acid sequence that has a homology of at least 1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%to any amino acid sequence as described herein.
[0273] In some embodiments, the disclosure relates to nucleotide sequences encoding any peptides that are described herein, or any amino acid sequences that are encoded by any nucleotide sequences as described herein. In some embodiments, the nucleic acid sequence is less than 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 150, 200, 250, 300, 350, 400, 500, or 600 nucleotides. In some embodiments, the amino acid sequence is less than 5, 6, 7, 8, 9, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 250, 300, 350, or 400 amino acid residues.
[0274] In some embodiments, the amino acid sequence (i) comprises an amino acid sequence; or (ii) consists of an amino acid sequence, wherein the amino acid sequence is any one of the sequences as described herein.
[0275] In some embodiments, the nucleic acid sequence (i) comprises a nucleic acid sequence; or (ii) consists of a nucleic acid sequence, wherein the nucleic acid sequence is any one of the sequences as described herein.
[0276] To determine the percent identity of two amino acid sequences, or of two nucleic acid sequences, the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in one or both of a first and a second amino acid or nucleic acid sequence for optimal alignment and non-homologous sequences can be disregarded for comparison purposes) . The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in the first sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the second sequence, then the molecules are identical at that position (as used herein amino acid or nucleic acid “identity” is equivalent to amino acid or nucleic acid “homology” ) . The percent identity between the two sequences is a function of the number of identical positions shared by the sequences, taking into account the number of gaps, and the length of each gap, which need to be introduced for optimal alignment of the two sequences. For example, the comparison of sequences and determination of percent identity between two sequences can be accomplished using a Blossum 62 scoring matrix with a gap penalty of 12, a gap extend penalty of4, and a frameshift gap penalty of5.
[0277] The percentage of sequence homology (e.g., amino acid sequence homology or nucleic acid homology) can also be determined. How to determine percentage of sequence homology is known in the art. In some embodiments, amino acid residues conserved with similar physicochemical properties (percent homology) , e.g. leucine and isoleucine, can be used to measure sequence similarity. Families of amino acid residues having similar physicochemical properties have been defined in the art. These families include e.g., amino acids with basic side chains (e.g., lysine, arginine, histidine) , acidic side chains (e.g., aspartic acid, glutamic acid) , uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine) , nonpolar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan) , beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine) . The homology percentage, in many cases, is higher than the identity percentage.
[0278] The disclosure provides one or more nucleic acid encoding any of the polypeptides as described herein. In some embodiments, the nucleic acid (e.g., cDNA) includes a polynucleotide encoding a polypeptide of a heavy chain as described herein. In some embodiments, the nucleic acid includes a polynucleotide encoding a polypeptide of a light chain as described herein. In some embodiments, the nucleic acid includes a polynucleotide encoding a scFv polypeptide as described herein.
[0279] In some embodiments, the vector can have two of the nucleic acids as described herein, wherein the vector encodes the VL region and the VH region that together bind to B7H3. In some embodiments, apair of vectors is provided, wherein each vector comprises one of the nucleic acids as described herein, wherein together the pair of vectors encodes the VL region and the VH region that together bind to B7H3.
[0280] In some embodiments, the vector includes two of the nucleic acids as described herein, wherein the vector encodes the VL region and the VH region that together bind to DLL3. In some embodiments, apair of vectors is provided, wherein each vector comprises one of the nucleic acids as described herein, wherein together the pair of vectors encodes the VL region and the VH region that together bind to DLL3.
[0281] Methods of Treatment
[0282] The methods described herein include methods for the treatment of disorders associated with cancer. Generally, the methods include administering a therapeutically effective amount of anti-DLL3 / B7H3 antibodies or anti-DLL3 / B7H3 antibody-drug conjugates as described herein, to a subject who is in need of, or who has been determined to be in need of, such treatment.
[0283] As used in this context, to “treat” means to ameliorate at least one symptom of the disorder associated with cancer. Often, cancer results in death; thus, a treatment can result in an increased life expectancy (e.g., by at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 months, or by at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 years) . Administration of a therapeutically effective amount of an agent described herein for the treatment of a condition associated with cancer will result in decreased number of cancer cells and / or alleviated symptoms.
[0284] As used herein, the term “cancer” refers to cells having the capacity for autonomous growth, i.e., an abnormal state or condition characterized by rapidly proliferating cell growth. The term is meant to include all types of cancerous growths or oncogenic processes, metastatic tissues or malignantly transformed cells, tissues, or organs, irrespective of histopathologic type or stage of invasiveness. The term “tumor” as used herein refers to cancerous cells, e.g., a mass of cancerous cells. Cancers that can be treated or diagnosed using the methods described herein include malignancies of the various organ systems, such as affecting lung, breast, thyroid, lymphoid, gastrointestinal, and genito-urinary tract, as well as adenocarcinomas which include malignancies such as most colon cancers, renal-cell carcinoma, prostate cancer and / or testicular tumors, non-small cell carcinoma of the lung, cancer of the small intestine and cancer of the esophagus. In some embodiments, the agents described herein are designed for treating or diagnosing a carcinoma in a subject. The term “carcinoma” is art recognized and refers to malignancies of epithelial or endocrine tissues including respiratory system carcinomas, gastrointestinal system carcinomas, genitourinary system carcinomas, testicular carcinomas, breast carcinomas, prostatic carcinomas, endocrine system carcinomas, and melanomas. In some embodiments, the cancer is renal carcinoma or melanoma. Exemplary carcinomas include those forming from tissue of the cervix, lung, prostate, breast, head and neck, colon and ovary. The term also includes carcinosarcomas, e.g., which include malignant tumors composed of carcinomatous and sarcomatous tissues. An “adenocarcinoma” refers to a carcinoma derived from glandular tissue or in which the tumor cells form recognizable glandular structures. The term “sarcoma” is art recognized and refers to malignant tumors of mesenchymal derivation.
[0285] In some embodiments, the cancer is a chemotherapy resistant cancer.
[0286] In one aspect, the disclosure also provides methods for treating a cancer in a subject, methods of reducing the rate of the increase of volume of a tumor in a subject over time, methods ofreducing the risk of developing a metastasis, or methods ofreducing the risk of developing an additional metastasis in a subject. In some embodiments, the treatment can halt, slow, retard, or inhibit progression of a cancer. In some embodiments, the treatment can result in the reduction of in the number, severity, and / or duration of one or more symptoms of the cancer in a subject.
[0287] In one aspect, the disclosure features methods that include administering a therapeutically effective amount of anti-DLL3 / B7H3 antibodies or an anti-DLL3 / B7H3 antibody drug conjugates disclosed herein to a subject in need thereof, e.g., a subject having, or identified or diagnosed as having, acancer, e.g., solid tumor, lung cancer (e.g., non-small cell lung cancer, lung adenocarcinoma, or lung carcinoma) , gastric cancer (e.g., gastric carcinoma) , skin cancer (e.g., skin carcinoma) , colorectal cancer, breast cancer, head and neck cancer, ovarian cancer, prostate cancer, thyroid cancer, pancreatic cancer, CNS cancer, liver cancer, nasopharynx cancer, brain cancer, colon cancer, bladder cancer, oral squamous cell carcinoma, cervical cancer, or oesophageal cancer. In some embodiments, the cancer is oesophageal cancer, colorectal cancer, gastric cancer, breast cancer, endometrial carcinoma, lung cancer, melanoma, ovarian cancer, bladder cancer, stomach cancer, Non-Hodgkin Lymphoma, head and neck cancer, pancreatic cancer and cervical cancer.
[0288] As used herein, the terms “subject” and “patient” are used interchangeably throughout the specification and describe an animal, human or non-human, to whom treatment according to the methods of the present invention is provided. Veterinary and non-veterinary applications are contemplated by the present invention. Human patients can be adult humans orjuvenile humans (e.g., humans below the age of 18 years old) . In addition to humans, patients include but are not limited to mice, rats, hamsters, guinea-pigs, rabbits, ferrets, cats, dogs, and primates. Included are, for example, non-human primates (e.g., monkey, chimpanzee, gorilla, and the like) , rodents (e.g., rats, mice, gerbils, hamsters, ferrets, rabbits) , lagomorphs, swine (e.g., pig, miniature pig) , equine, canine, feline, bovine, and other domestic, farm, and zoo animals.
[0289] In some embodiments, the compositions and methods disclosed herein can be used for treatment of patients at risk for a cancer. Patients with cancer can be identified with various methods known in the art.
[0290] As used herein, by an “effective amount” is meant an amount or dosage sufficient to effect beneficial or desired results including halting, slowing, retarding, or inhibiting progression of a disease, e.g., a cancer. An effective amount will vary depending upon, e.g., an age and a body weight of a subject to which the anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen binding fragment, anti-DLL3 / B7H3 antibody-drug conjugates, anti-DLL3 / B7H3 antibody-encoding polynucleotide, vector comprising the polynucleotide, and / or compositions thereof is to be administered, a severity of symptoms and a route of administration, and thus administration can be determined on an individual basis.
[0291] An effective amount can be administered in one or more administrations. By way of example, an effective amount of an anti-DLL3 / B7H3 antibody, an anti-DLL3 / B7H3 antigen binding fragment, or an anti-DLL3 / B7H3 antibody-drug conjugate is an amount sufficient to ameliorate, stop, stabilize, reverse, inhibit, slow and / or delay progression of an autoimmune disease or a cancer in a patient or is an amount sufficient to ameliorate, stop, stabilize, reverse, slow and / or delay proliferation of a cell (e.g., a biopsied cell, any of the cancer cells described herein, or cell line (e.g., a cancer cell line) ) in vitro. As is understood in the art, an effective amount of an anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen binding fragment, or anti-DLL3 / B7H3 antibody-drug conjugate may vary, depending on, inter alia, patient history as well as other factors such as the type (and / or dosage) of the agent used.
[0292] Effective amounts and schedules for administering the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding fragments thereof, anti-DLL3 / B7H3 antibody-encoding polynucleotides, anti-DLL3 / B7H3 antibody-drug conjugates, and / or compositions disclosed herein may be determined empirically, and making such determinations is within the skill in the art. Those skilled in the art will understand that the dosage that must be administered will vary depending on, for example, the mammal that will receive the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding fragments thereof, anti-DLL3 / B7H3 antibody-encoding polynucleotides, anti-DLL3 / B7H3 antibody-drug conjugates, and / or compositions disclosed herein, the route of administration, the particular type of the agent or compositions disclosed herein used and other drugs being administered to the mammal.
[0293] A typical daily dosage of an effective amount of an anti-DLL3 / B7H3 antibody or anti-DLL3 / B7H3 ADC is 0.01 mg / kg to 100 mg / kg. In some embodiments, the dosage can be less than 100 mg / kg, 30 mg / kg, 20 mg / kg, 10 mg / kg, 9 mg / kg, 8 mg / kg, 7 mg / kg, 6 mg / kg, 5 mg / kg, 4 mg / kg, 3 mg / kg, 2 mg / kg, 1 mg / kg, 0.5 mg / kg, or 0.1 mg / kg. In some embodiments, the dosage can be greater than 10 mg / kg, 9 mg / kg, 8 mg / kg, 7 mg / kg, 6 mg / kg, 5 mg / kg, 4 mg / kg, 3 mg / kg, 2 mg / kg, 1 mg / kg, 0.5 mg / kg, 0.1 mg / kg, 0.05 mg / kg, or 0.01 mg / kg. In some embodiments, the dosage is about or at least 10 mg / kg, 9 mg / kg, 8 mg / kg, 7 mg / kg, 6 mg / kg, 5 mg / kg, 4 mg / kg, 3 mg / kg, 2 mg / kg, 1 mg / kg, 0.9 mg / kg, 0.8 mg / kg, 0.7 mg / kg, 0.6 mg / kg, 0.5 mg / kg, 0.4 mg / kg, 0.3 mg / kg, 0.2 mg / kg, or 0.1 mg / kg.
[0294] In any of the methods described herein, the at least one anti-DLL3 / B7H3 antibody, the anti-DLL3 / B7H3 antigen-binding fragment thereof, anti-DLL3 / B7H3 antibody-drug conjugates, or pharmaceutical composition (e.g., comprising any of the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding antibody fragments, or anti-DLL3 / B7H3 ADC) and, optionally, at least one additional therapeutic agent can be administered to the subject (e.g., once a week, twice a week, three times a week, four times a week, once a day, twice a day, or three times a day) .
[0295] In some embodiments, the one or more additional therapeutic agents can be administered to the subject prior to, or after administering the at least one anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding antibody fragment, anti-DLL3 / B7H3 antibody-drug conjugate, or pharmaceutical composition (e.g., comprising any of the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding antibody fragments, or anti-DLL3 / B7H3 ADC) . In some embodiments, the one or more additional therapeutic agents and the at least one anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding antibody fragment, or anti-DLL3 / B7H3 antibody-drug conjugate are administered to the subject such that there is an overlap in the bioactive period of the one or more additional therapeutic agents and the at least one anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding fragment, or anti-DLL3 / B7H3 ADC in the subject.
[0296] In some embodiments, the subject can be administered the at least one anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding antibody fragment, anti-DLL3 / B7H3 antibody-drug conjugate, or pharmaceutical composition (e.g., comprising any of the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding antibody fragments, or anti-DLL3 / B7H3 ADC) over an extended period of time (e.g., over a period of at least 1 week, 2 weeks, 3 weeks, 1 month, 2 months, 3 months, 4 months, 5 months, 6 months, 7 months, 8 months, 9 months, 10 months, 11 months, 12 months, 1 year, 2 years, 3 years, 4 years, or 5 years) . A skilled medical professional may determine the length of the treatment period using any of the methods described herein for diagnosing or following the effectiveness of treatment (e.g., the observation of at least one symptom of cancer) . As described herein, a skilled medical professional can also change the identity and number (e.g., increase or decrease) of anti-DLL3 / B7H3 antibodies or anti-DLL3 / B7H3 antigen-binding antibody fragments, anti-DLL3 / B7H3 antibody-drug conjugates (and / or one or more additional therapeutic agents) administered to the subject and can also adjust (e.g., increase or decrease) the dosage or frequency of administration of at least one anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding antibody fragment, or anti-DLL3 / B7H3 ADC (and / or one or more additional therapeutic agents) to the subject based on an assessment of the effectiveness of the treatment (e.g., using any of the methods described herein and known in the art) .
[0297] In some embodiments, one or more additional therapeutic agents can be administered to the subject. The additional therapeutic agent can comprise one or more inhibitors selected from the group consisting of an inhibitor of B-Raf, an EGFR inhibitor, an inhibitor of a MEK, an inhibitor of ERK, an inhibitor of K-Ras, an inhibitor of c-Met, an inhibitor of anaplastic lymphoma kinase (ALK) , an inhibitor of a phosphatidylinositol 3-kinase (PI3K) , an inhibitor of an Akt, an inhibitor of mTOR, a dual PI3K / mTOR inhibitor, an inhibitor of Bruton's tyrosine kinase (BTK) , and an inhibitor of Isocitrate dehydrogenase 1 (IDH1) and / or Isocitrate dehydrogenase 2 (IDH2) . In some embodiments, the additional therapeutic agent is an inhibitor of indoleamine 2, 3-dioxygenase-1 (IDO1) (e.g., epacadostat) .
[0298] In some embodiments, the additional therapeutic agent can comprise one or more inhibitors selected from the group consisting of an inhibitor of HER3, an inhibitor of LSD1, an inhibitor of MDM2, an inhibitor of BCL2, an inhibitor of CHK1, an inhibitor of activated hedgehog signaling pathway, and an agent that selectively degrades the estrogen receptor.
[0299] In some embodiments, the additional therapeutic agent can comprise one or more therapeutic agents selected from the group consisting of Trabectedin, nab-paclitaxel, Trebananib, Pazopanib, Cediranib, Palbociclib, everolimus, fluoropyrimidine, IFL, regorafenib, Reolysin, Alimta, Zykadia, Sutent, temsirolimus, axitinib, sorafenib, Votrient, IMA-901, AGS-003, cabozantinib, Vinflunine, an Hsp90 inhibitor, Ad-GM-CSF, Temazolomide, IL-2, IFNa, vinblastine, Thalomid, dacarbazine, cyclophosphamide, lenalidomide, azacytidine, bortezomid, amrubicine, carfilzomib, pralatrexate, and enzastaurin.
[0300] In some embodiments, the additional therapeutic agent can comprise one or more therapeutic agents selected from the group consisting of an adjuvant, a TLR agonist, tumor necrosis factor (TNF) alpha, IL-1, HMGB1, an IL-10 antagonist, an IL-4 antagonist, an IL-13 antagonist, an IL-17 antagonist, an HVEM antagonist, an ICOS agonist, a treatment targeting CX3CL1, a treatment targeting CXCL9, a treatment targeting CXCL10, a treatment targeting CCL5, an LFA-1 agonist, an ICAM1 agonist, and a Selectin agonist.
[0301] In some embodiments, carboplatin, nab-paclitaxel, paclitaxel, cisplatin, pemetrexed, gemcitabine, FOLFOX, or FOLFIRI are administered to the subject.
[0302] In some embodiments, the additional therapeutic agent is an anti-PD-1 antibody, an anti-PD-L1 antibody, anti-PD-L2 antibody, an anti-LAG-3 antibody, an anti-TIGIT antibody, an anti-CTLA4 antibody, an anti-CD40 antibody, an anti-OX40 antibody, an anti-4-1BB antibody, an anti-TIM3 antibody, or an anti-GITR antibody.
[0303] Pharmaceutical Compositions and Routes of Administration
[0304] Also provided herein are pharmaceutical compositions that contain at least one (e.g., one, two, three, or four) of the anti-DLL3 / B7H3 antibodies (e.g., bispecific antibodies) , anti-DLL3 / B7H3 antigen-binding fragments, or anti-DLL3 / B7H3 antibody-drug conjugates described herein. The pharmaceutical compositions may be formulated in any manner known in the art.
[0305] Pharmaceutical compositions are formulated to be compatible with their intended route of administration (e.g., intravenous, intraarterial, intramuscular, intradermal, subcutaneous, or intraperitoneal) . The compositions can include a sterile diluent (e.g., sterile water or saline) , a fixed oil, polyethylene glycol, glycerine, propylene glycol or other synthetic solvents, antibacterial or antifungal agents, such as benzyl alcohol or methyl parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like, antioxidants, such as ascorbic acid or sodium bisulfite, chelating agents, such as ethylenediaminetetraacetic acid, buffers, such as acetates, citrates, or phosphates, and isotonic agents, such as sugars (e.g., dextrose) , polyalcohols (e.g., mannitol or sorbitol) , or salts (e.g., sodium chloride) , or any combination thereof. Liposomal suspensions can also be used as pharmaceutically acceptable carriers (see, e.g., U.S. Patent No. 4,522,811) . Preparations of the compositions can be formulated and enclosed in ampules, disposable syringes, or multiple dose vials. Where required (as in, for example, injectable formulations) , proper fluidity can be maintained by, for example, the use of a coating, such as lecithin, or a surfactant. Absorption of the anti-DLL3 / B7H3 antibody, anti-DLL3 / B7H3 antigen-binding fragment thereof, or the anti-DLL3 / B7H3 ADC can be prolonged by including an agent that delays absorption (e.g., aluminum monostearate and gelatin) . Alternatively, controlled release can be achieved by implants and microencapsulated delivery systems, which can include biodegradable, biocompatible polymers (e.g., ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid; Alza Corporation and Nova Pharmaceutical, Inc. ) .
[0306] Compositions containing one or more of any of the anti-DLL3 / B7H3 antibodies, anti-DLL3 / B7H3 antigen-binding fragments, anti-DLL3 / B7H3 antibody-drug conjugates described herein can be formulated for parenteral (e.g., intravenous, intraarterial, intramuscular, intradermal, subcutaneous, or intraperitoneal) administration in dosage unit form (i.e., physically discrete units containing a predetermined quantity of active compound for ease of administration and uniformity of dosage) .
[0307] Toxicity and therapeutic efficacy of compositions can be determined by standard pharmaceutical procedures in cell cultures or experimental animals (e.g., monkeys) . One can determine the LD50 (the dose lethal to 50%of the population) and the ED50 (the dose therapeutically effective in 50%of the population) : the therapeutic index being the ratio of LD50: ED50. Agents that exhibit high therapeutic indices are preferred. Where an agent exhibits an undesirable side effect, care should be taken to minimize potential damage (i.e., reduce unwanted side effects) . Toxicity and therapeutic efficacy can be determined by other standard pharmaceutical procedures.
[0308] Data obtained from cell culture assays and animal studies can be used in formulating an appropriate dosage of any given agent for use in a subject (e.g., a human) . A therapeutically effective amount of the anti-DLL3 / B7H3 antibodies, an anti-DLL3 / B7H3 antigen-binding fragment thereof, or an anti-DLL3 / B7H3 ADC will be an amount that treats the disease (e.g., kills cancer cells) in a subject (e.g., a human subject identified as having cancer) , or a subject identified as being at risk of developing the disease (e.g., a subject who has previously developed cancer but now has been cured) , decreases the severity, frequency, and / or duration of one or more symptoms of a disease in a subject (e.g., a human) . The effectiveness and dosing of any of the anti-DLL3 / B7H3 antibodies, the anti-DLL3 / B7H3 antigen-binding fragment thereof, or the anti-DLL3 / B7H3 ADC described herein can be determined by a health care professional or veterinary professional using methods known in the art, as well as by the observation of one or more symptoms of disease in a subject (e.g., a human) . Certain factors may influence the dosage and timing required to effectively treat a subject (e.g., the severity of the disease or disorder, previous treatments, the general health and / or age of the subject, and the presence of other diseases) .
[0309] Exemplary doses include milligram or microgram amounts of any of the anti-DLL3 / B7H3 antibodies, the anti-DLL3 / B7H3 antigen-binding fragment thereof, or the anti-DLL3 / B7H3 ADC described herein per kilogram of the subject’s weight (e.g., about 1μg / kg to about 500 mg / kg; about 100 μg / kg to about 500 mg / kg; about 100μg / kg to about 50 mg / kg; about 10μg / kg to about 5 mg / kg; about 10μg / kg to about 0.5 mg / kg; or about 0.1 mg / kg to about 0.5 mg / kg) . While these doses cover a broad range, one of ordinary skill in the art will understand that therapeutic agents vary in their potency, and effective amounts can be determined by methods known in the art. Typically, relatively low doses are administered at first, and the attending health care professional or veterinary professional (in the case of therapeutic application) or a researcher (when still working at the development stage) can subsequently and gradually increase the dose until an appropriate response is obtained. In addition, it is understood that the specific dose level for any particular subject will depend upon a variety of factors including the activity of the specific compound employed, the age, body weight, general health, gender, and diet of the subject, the time of administration, the route of administration, the rate of excretion, and the half-life of the therapeutic agent in vivo.
[0310] The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration. The disclosure also provides methods of manufacturing the anti-DLL3 / B7H3 antibodies, the anti-DLL3 / B7H3 antigen-binding fragment thereof, or the anti-DLL3 / B7H3 ADC for various uses as described herein.
[0311] EXAMPLES
[0312] The invention is further described in the following examples, which do not limit the scope of the invention described in the claims.
[0313] Example 1. Preparation of anti-DLL3 / B7H3 antibodies
[0314] Provided herein are bispecific antigen-binding molecules targeting DLL3 and B7H3. These antigen-binding molecules are referred to as anti-DLL3 / B7H3 antibody below.
[0315] Anti-DLL3 antibodies (2A2, VH SEQ ID NO: 29, VL SEQ ID NO: 28; and 2BL2, VH SEQ ID NO: 30, VL SEQ ID NO: 28) and anti-B7H3 antibodies (20H8, VH SEQ ID NO: 31, VL SEQ ID NO: 28; and 21A9, VH SEQ ID NO: 32, VL SEQ ID NO: 28) can be paired to form bispecific antibodies. Vectors encoding the light chain and heavy chain of the antibodies were constructed. CHO-S cells were co-transfected with three vectors, including a first vector encoding the heavy chain of an anti-DLL3 antibody, a second vector encoding the heavy chain of an anti-B7H3 antibody, and a third vector encoding the common light chain. After 14 days of culture, the cell supernatant was collected and purified by Protein A affinity chromatography. Exemplary bispecific antibodies obtained include 2A2-21A9, 2BL2-21A9, 2A2-20H8, and 2BL2-20H8.
[0316] Various methods can be used to reduce the chance of wrong pairing between the two heavy chains. For example, knobs-into-holes mutations were introduced in the Fc regions of the anti-DLL3 arm heavy chain and the anti-B7H3 arm heavy chain. For example, in 2A2-21A9, the heavy chain constant region of 2A2 includes knob mutations, and the heavy chain constant region of21A9 includes hole mutations. In 2BL2-21A9, the heavy chain constant region of2BL2 includes knob mutations, and the heavy chain constant region of21A9 includes hole mutations. In 2A2-20H8, the heavy chain constant region of2A2 includes knob mutations, and the heavy chain constant region of20H8 includes hole mutations. In 2BL2-20H8, the heavy chain constant region of2BL2 includes knob mutations, and the heavy chain constant region of20H8 includes hole mutations.
[0317] The sequences of the light chain constant region, the heavy chain constant region with knob mutations, and the heavy chain constant region with hole mutations are shown in SEQ ID NO: 33, SEQ ID NO: 34 and SEQ ID NO: 35, respectively.
[0318] For comparative purposes, five different reference antibodies: Ref1, Ref2 and Ref3 (with specificity for B7H3) , Ref4 and Ref5 (with specificity for DLL3) , synthesized from published amino acid sequence information, were used in the following experiments. Specifically, The VH and VL sequences set forth in SEQ ID NOs: 36-45 were linked to the human IgG1 constant region respectively, to form Ref1, Ref2, Ref3, Ref4, and Ref5.
[0319] Example 2. Binding affinity of anti-DLL3 / B7H3 antibodies
[0320] The binding affinity of anti-DLL3 / B7H3 antibodies to His-tagged human B7H3 (4Ig) (hB7H3-4Ig-His, ACRO Biosystems Inc., Cat#: B7B-H52E7) , His-tagged monkey B7H3 (fasB7H3-His, ACRO Biosystems Inc., Cat#: B73-C52Ha) , His-tagged human DLL3 (hDLL3-His, ACRO Biosystems Inc., Cat#: DL3-H52H4) , and His-tagged monkey DLL3 (fasDLL3-His, ACRO Biosystems Inc., Cat#: DL3-C52H3) were verified by Biolayer Interferometry (BLI) using ForteBio Octet system.
[0321] Specifically, anti-DLL3 / B7H3 antibodies were loaded onto Protein A sensor at 5 ug / mL to yield a response of 1.0 nm. Kinetic measurements were performed at a concentration of200 nM of the recombinant His-tagged human / monkey DLL3 protein or at a concentration of 100 nM of the recombinant His-tagged human / monkey B7H3 protein. The association phase lasted for 180 s and the dissociation phase lasted 600 s followed by a regeneration step with 10 mM Glycine-HCl, pH1.7. Data analysis was performed using the Octec Analysis Studio (12.2.2.26) using a standard 1: 1 binding model. Human IgG1 was used as an ISO control.
[0322] Affinity values were deduced from the quotient of the kinetic rate constants (KD=koff / kon) . The results for the tested antibodies are summarized in the table below, which showed that all anti-DLL3 / B7H3 antibodies had good binding affinity to human B7H3, monkey B7H3, human DLL3, and monkey DLL3.
[0323] Table 1 “ / ” indicates negative
[0324] Example 3. Binding activity of anti-DLL3 / B7H3 antibodies to tumor cells
[0325] The binding activity of anti-DLL3 / B7H3 antibodies to tumor cell lines were verified by flow cytometry. Briefly, SHP-77 cells or NCI-H524 cells were plated in a 96-well plate at a density of 1×105 cells / well, respectively. Purified anti-DLL3 / B7H3 antibody was added to each well, and incubated at 4℃for 30 minutes. The working concentration of the antibody is 2.5μg / mL. After washing with PBS, the cells were incubated with the secondary antibody Alexa 647 anti-human IgG Fcγ (Jackson ImmunoResearch Laboratories, Inc., Cat#: 109-606-170) at 4℃for 15 minutes. The cells were collected and tested by flow cytometry analysis. Human IgG1 was used as an ISO control.
[0326] The results are shown in the table below. The anti-DLL3 / B7H3 antibodies exhibited good binding activities to various cancer cell lines.
[0327] Table 2
[0328] Example 4. Internalization of anti-DLL3 / B7H3 antibodies
[0329] 10μg / mL anti-DLL3 / B7H3 antibodies together with the pHAb-AffiniPure Fab Goat Anti-Human IgG secondary antibody were added to SHP-77 cells or NCI-H524 cells, and incubated for 1, 3 or 5 hours, respectively. The cells were centrifuged and washed with FACS buffer. MFI was measured using a flow cytometer. Endocytosis rates of antibodies were calculated. For isotype control (ISO) , human IgG1 protein was used.
[0330] The results are summarized in the table below. Compared with positive controls Ref1, Ref2, Ref3, Ref4, and Ref5, all the anti-DLL3 / B7H3 antibodies exhibited better endocytosis activity in SHP-77 cells or NCI-H524 cells at 5 hours. In addition, all the anti-DLL3 / B7H3 antibodies showed stronger internalization activity than the corresponding parental monoclonal antibodies, with synergistic effects especially at 5 hours.
[0331] Table 3
[0332] In another experiment, the internalization of anti-DLL3 / B7H3 antibodies (2.5μg / mL) were tested in DMS79 cells or NCI-H69 cells, and the results are shown in FIG. 8. Compared with positive controls Ref1, Ref3, and Ref5, all the anti-DLL3 / B7H3 antibodies exhibited better endocytosis activity in DMS79 cells (FIG. 8 (A) and FIG. 8 (B) ) or NCI-H69 cells (FIG. 8 (C) and FIG. 8 (D) ) . In addition, all the anti-DLL3 / B7H3 antibodies showed stronger internalization activity than the corresponding parental monoclonal antibodies, with synergistic effects.
[0333] Example 5. Developability assessment of anti-DLL3 / B7H3 antibodies
[0334] Developability of anti-DLL3 / B7H3 antibodies was evaluated.
[0335] The anti-DLL3 / B7H3 antibodies were buffer exchanged into pH 6.0 (3 mg / mL histidine, 80 mg / mL sucrose, and 0.2 mg / mL Tween 80) . The antibodies were kept in sealed Eppendorf tubes at 40±3℃for 7 days (hereinafter referred to as 40℃) , and their thermal stability were evaluated.
[0336] The anti-DLL3 / B7H3 antibodies were loaded into protein A column and eluted with a buffer (0.1 mol / L HAc) at pH 3.5. Half of the antibodies were added into 2 M Tris buffer to make the pH into 7.5 immediately. The remain half were kept at pH 3.5 for 6 hours and then adjusted the pH into 7.5. The diluted antibodies were kept in sealed Eppendorf tubes at pH 3.5±0.1, 25±2℃ (hereinafter referred to as pH 3.5) for 6 hours to test stability at low pH.
[0337] The anti-DLL3 / B7H3 antibodies were buffer exchanged into pH 6.0 (3 mg / mL histidine, 80 mg / mL sucrose, and 0.2 mg / mL 80) and added NH4HCO3 stockto final of0.94%NH4HCO3. Samples were kept in sealed Eppendorf tubes at 40±3℃for 6 hours (hereinafter referred to as NH4HCO3 6h) , or 24 hours (hereinafter referred to as NH4HCO324h) to test stability.
[0338] The anti-DLL3 / B7H3 antibodies were buffer exchanged into pH 6.0 (3 mg / mL histidine, 80 mg / mL sucrose, and 0.2 mg / mL 80) . H2O2was then added to achieve final concentrations of 0.05%H2O2 and 0.5%H2O2, respectively (hereinafter referred to as 0.05%H2O2and 0.5%H2O2, respectively) . Samples were kept in sealed Eppendorf tubes at 40±3℃for 30 minutes to test stability.
[0339] After the above treatments, the following analyses were performed: (1) The purity of antibodies were measured by Size-Exclusion High Performance Liquid Chromatography (SEC-HPLC) (indicated as the percentage of the main peak area to the sum of all peak areas (Purity, %) ) ; (2) detecting changes in the apparent hydrophobicity of the antibodies using the Hydrophobic Interaction Chromatography-High Performance Liquid Chromatography (HIC-HPLC) method (indicated as the retention time of the main peak (HIC, min) ) ; (3) detecting the purity changes of antibodies by capillary electrophoresis-sodium dodecyl sulphate (CE-SDS) under non-reducing (CE-SDS (NR) ) conditions (indicated as the percentage of the main peak area to the sum of all peak areas (Purity, %) ) ; (4) detecting the pI (isoelectric point) and charge variants in the antibodies by the Capillary Isoelectric Focusing (cIEF) method (indicated as the percentages of the main component, acidic component, and alkaline component) .
[0340] In the SEC-HPLC experiments, the antibody samples were diluted to 1 mg / mL with purified water and anAgilent 1290 chromatograph system (connected with XBridge Protein BEH SEC column ( Waters Corporation) ) was used. The following parameters were used: mobile phase: 0.1M phosphate buffer (PB) +10%ACN, pH 7.4; flow rate: 1.8 mL / min; column temperature: 25℃; detection wavelength: 280 nm, 220 nm; injection volume: 10μL; sample tray temperature: about 4℃; and running time: 7 minutes.
[0341] In the HIC-HPLC experiments, an Agilent 1260 chromatograph system (connected with ProPac HIC-10 column (4.6×250 mm, Thermo Scientific) ) was used, and samples were 10 times diluted using mobile phase A. The following parameters were used: mobile phase A: 0.9 M ammonium sulfate, 0.1 M phosphate buffer (PB) , 10%acetonitrile pH 6.5; mobile phase B: 0.1 M phosphate buffer (PB) , 10%acetonitrile pH 6.5; flow rate: 0.8 mL / min; gradient: 0 min 100%A, 2 min 100%A, 32 min 100%B, 34 min 100%B, 35 min 100%A, and45 min 100%A; column temperature: 30℃; detection wavelength: 280 nm,220 nm; injection volume: 10μg; sample tray temperature: about 10℃; and running time: 50 minutes.
[0342] In the icIEF experiments, a MauriceTMcIEF Method Development Kit (ProteinSimple, Cat#: PS-MDK01-C) was used for sample preparation. Specifically, 8μL, 30 ug protein sample was mixed with the following reagents in the kit: 1μL MauriceTM cIEF pI Marker-7.05, 1μL MauriceTM cIEF pI Marker-10.10, 35μL 1%Methyl Cellulose Solution, 2μL MauriceTM cIEF 500 mM Arginine, 1.33μL Ampholytes (Pharmalyte pH ranges 3-10) , and 6.66μL Ampholytes (Pharmalyte pH ranges 8-10.5) water (added to make a final volume of 100μL) . On the MauriceTM analyzer (ProteinSimple, Santa Clara, CA) , MauriceTM cIEF Cartridges (PS-MC02-C) were used to generate imaging capillary isoelectric focusing spectra. The sample was focused for a total of 10 minutes.
[0343] In the CE-SDS experiments, MauriceTM (ProteinSimple, Maurice) and MauriceTM CE-SDS Size Application Kit (ProteinSimple, Cat#: PS-MAK02-S) were used. In CE-SDS (NR) , 66.7μL Sample Buffer, 66.7μg antibody sample, 2.5μL 25×internal standard, 5μL 250 nM Iodoacetamide (SIGMA, Cat#: 16125) were add to a microcentrifuge tube, followed by centrifugation at 3000 rpm for 1 minute and heating in a 70℃water bath for 10 minutes. The samples were then cooled to room temperature followed by centrifugation at 10000 rpm for 3 minutes. Supernatant sample preparations were then transferred to a 96-well plate and tested in MauriceTM. The following parameters were used: injection voltage 4.6 kV, injection time 20 sec, separation voltage 5.75 kV, and separation time 40 min.
[0344] Detailed results of anti-DLL3 / B7H3 antibodies are shown in the tables below. The results showed that all the anti-DLL3 / B7H3 antibodies exhibited good stability and physicochemical properties.
[0345] Table 4
[0346] Example 6. Anti-DLL3 / B7H3 Antibody Drug Conjugates (ADC)
[0347] Each purified antibody (2A2-21A9, 2BL2-21A9, 2A2-20H8, or 2BL2-20H8) was coupled with CPT-1, CPT-2, CPT-3, or CPT-4, through CPT-L linker. For the names of the ADCs, CPTx is added directly after the antibody name. For example, if2A2-21A9 is coupled to CPT-1, it is named as 2A2-21A9-CPT1. For another example, if2A2-21A9 is coupled to CPT-2, it is named as 2A2-21A9-CPT2. Antibody-drug conjugates produced by similar methods also included Ref1-CPT2, and Ref5-CPT2. For isotype control, human IgG1 was coupled to CPT-2 to form ISO-CPT2. MS (Mass Spectrometry) was used to detect the coupling of antibodies with drug molecules. The MS detection results showed that the drug-to-antibody ratio (DAR) of the ADCs was about 8.
[0348] For comparative purposes, the reference antibody Ref1 was also conjugated with Dxd through a GGFG linker. Human IgG1 was also coupled to Dxd to form ISO-Dxd for isotype control. Reversed-Phase High-Performance Liquid Chromatography (RP-HPLC) were used to detect the coupling of antibodies with drug molecules. The results show that the DAR of the ADCs was about 4.
[0349] Example 7. Anti-Tumor Activity in A-431 xenograft model
[0350] The ADCs were tested for their effect on tumor growth in vivo in a model of epidermoid carcinoma A-431 xenograft model. Specifically, about 1×106A-431 cells were injected subcutaneously in B-NDG mice (Biocytogen Pharmaceuticals (Beijing) Co., Ltd., Cat#: B-CM-002) . When the tumors in the mice reached a volume of about 200 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) or 2 mg / kg ISO-CPT2 (G2) , Ref5-CPT2 (G3) , 2A2-21A9-CPT2 (G4) , 2BL2-21A9-CPT2 (G5) , 2A2-20H8-CPT2 (G6) , or 2BL2-20H8-CPT2 (G7) by intravenous (i. v. ) administration. The frequency of administration was once a week (2 administrations in total) .
[0351] The lengths of the long axis and the short axis of the tumor were measured, and the volume of the tumor was calculated as 0.5× (long axis) × (short axis) 2. The tumor growth inhibition (TGI) was calculated using the following formula: TGI (%) = [1- (Ti-T0) / (Vi-V0) ] ×100%. Ti is the average tumor volume in the treatment group on day i. T0 is the average tumor volume in the treatment group on day zero. Vi is the average tumor volume in the control group on day i. V0 is the average tumor volume in the control group on day zero. T-test was performed for statistical analysis. P<0.05 is a threshold to indicate significant difference.
[0352] The tumor volumes were measured twice a week. As shown in FIG. 4, the tumor volumes in treatment groups G4-G7 were smaller than those in the control groups G1 and G2. The results also showed that all the anti-DLL3 / B7H3 ADCs (G4-G7) exhibited better anti-tumor activity than that of the positive control Ref5-CPT2 (G3) . Specifically, the TGI%on Day 16 in groups of G4-G7 was 52.5%, 39.6%, 42.1%, and48.4%respectively, which were higher than that of G2 and G3 (14.3%and 16.5%) , indicating that 2A2-21A9-CPT2, 2BL2-21A9-CPT2, 2A2-20H8-CPT2, and2BL2-20H8-CPT2 exhibited good tumor inhibitory effect in epidermoid carcinoma model.
[0353] Example 8. Anti-Tumor Activity in NCI-H1975 xenograft model
[0354] The ADCs were tested for their effect on tumor growth in vivo in a model of lung cancer NCI-H1975 xenograft model. Specifically, about2×106 NCI-H1975 cells were injected subcutaneously in B-NDG mice. When the tumors in the mice reached a volume of about 200 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) or 2 mg / kg ISO-CPT2 (G2) , Ref5-CPT2 (G3) , 2A2-21A9-CPT2 (G4) , 2BL2-21A9-CPT2 (G5) , 2A2-20H8-CPT2 (G6) , or 2BL2-20H8-CPT2 (G7) by intravenous (i. v. ) administration. The frequency of administration was once a week (2 administrations in total) .
[0355] The tumor volumes were measured twice a week. As shown in FIG. 5, the tumor volumes in treatment groups G4-G7 were smaller than those in the control groups G1 and G2. The results also showed that all the anti-DLL3 / B7H3 ADCs (G4-G7) exhibited better anti-tumor activity than that of the positive control Ref5-CPT2 (G3) . Specifically, the TGI%on Day 20 in groups of G4-G7 was 73.9%, 71.3%, 58.0%, and 54.4%respectively, which were higher than that of G2 and G3 (37.0%and25.8%) , indicating that 2A2-21A9-CPT2, 2BL2-21A9-CPT2, 2A2-20H8-CPT2, and2BL2-20H8-CPT2 exhibited good tumor inhibitory effect in lung cancer model.
[0356] Example 9. Anti-Tumor Activity in SHP-77 xenograft model
[0357] The ADCs were tested for their effect on tumor growth in vivo in a model of lung cancer SHP-77 xenograft model. Specifically, about 1×106 SHP-77 cells were injected subcutaneously in B-NDG mice. When the tumors in the mice reached a volume of about 200-250 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) or 2 mg / kg ISO-CPT2 (G2) , Ref1-CPT2 (G3) , 2A2-21A9-CPT2 (G4) , 2BL2-21A9-CPT2 (G5) , 2A2-20H8-CPT2 (G6) , or 2BL2-20H8-CPT2 (G7) by intravenous (i. v. ) administration. The frequency of administration was once a week (2 administrations in total) .
[0358] The tumor volumes were measured twice a week. As shown in FIG. 6, the tumor volumes in treatment groups G4-G7 were smaller than those in the control groups G1 and G2. The results also showed that all the anti-DLL3 / B7H3 ADCs (G4-G7) exhibited better anti-tumor activity than that of the positive control Ref1-CPT2 (G3) . Specifically, the TGI% (e.g., on Day 14) in groups of G4-G7 was 80.9%, 80.8%, 84.7%, and 76.2%respectively, which were higher than that of G2 (23.1%) , indicating that 2A2-21A9-CPT2, 2BL2-21A9-CPT2, 2A2-20H8-CPT2, and2BL2-20H8-CPT2 exhibited good tumor inhibitory effect in lung cancer model.
[0359] Example 10. Anti-Tumor Activity in NCI-H69 xenograft model
[0360] The ADCs were tested for their effect on tumor growth in vivo in a model of lung cancer NCI-H69 xenograft model. Specifically, about 2×106 NCI-H69 cells were injected subcutaneously in B-NDG mice. When the tumors in the mice reached a volume of about 200-250 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) or 3 mg / kg ISO-CPT2 (G2) , Ref1-CPT2 (G3) , 2A2-21A9-CPT2 (G4) , 2BL2-21A9-CPT2 (G5) , 2A2-20H8-CPT2 (G6) , or 2BL2-20H8-CPT2 (G7) by intravenous (i. v. ) administration. The frequency of administration was once a week (2 administrations in total) .
[0361] The tumor volumes were measured twice a week. As shown in FIG. 7, the tumor volumes in treatment groups G4-G7 were smaller than those in the control groups G1 and G2. The results also showed that all the anti-DLL3 / B7H3 ADCs (G4-G7) exhibited better anti-tumor activity than that of the positive control Ref1-CPT2 (G3) . Specifically, the TGI% (e.g., on Day 17) in groups of G4-G7 was 96.9%, 90.9%, 100.7%, and 91.9%respectively, which were higher than that of G2 and G3 (41.1%and 73.6%) , indicating that 2A2-21A9-CPT2, 2BL2-21A9-CPT2, 2A2-20H8-CPT2, and2BL2-20H8-CPT2 exhibited good tumor inhibitory effect in lung cancer model.
[0362] In another experiment, about 2×106 NCI-H69 cells were injected subcutaneously in B-NDG mice, and when the tumor volume grew to about 200 mm3, the mice were divided to different groups based on tumor size (5 mice per group) . The mice were then injected with PBS (G1) , 2 mg / kg ISO-CPT2 (G2) , 2 mg / kg ISO-Dxd (G3) , 12 mg / kg Ref1-Dxd (G4) , 2 mg / kg Ref1-CPT2 (G5) , or 2 mg / kg 2A2-21A9-CPT2 (G6) by i. v. administration. The frequency of administration was once a week (2 administrations in total) .
[0363] The tumor volume was measured twice a week. As shown in FIG. 12, 2A2-21A9-CPT2 (G6) exhibited better anti-tumor activity than the positive control Ref1-CPT2 (G3) at the same dosage; additionally, anti-tumor activity of2A2-21A9-CPT2 (G6) at 3 mg / kg was comparable to positive control Ref1-Dxd (G4) at its clinical trial dose of 12 mg / kg. Specifically, the TGI% (e.g., on Day 14) of G2-G6 was 46.9%, 76.5%, 90.5%, 63.0%, and 89.3%, respectively.
[0364] Example 11. Anti-Tumor Activity in NCI-H524 xenograft model
[0365] The ADCs were tested for their effect on tumor growth in vivo in a model of lung cancer NCI-H524 xenograft model. Specifically, about 1×106 NCI-H524 cells were injected subcutaneously in B-NDG mice. When the tumor volume reached about 200 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) , ISO-CPT2 (G2) , Ref1-CPT2 (G3) , or 2A2-21A9-CPT2 (G4) by i. v. administration. The frequency of administration was once a week (2 administrations in total) .
[0366] The tumor volumes were measured twice a week. As shown in FIG. 9, 2A2-21A9-CPT2 (G4) exhibited better anti-tumor activity than that of the positive control group Ref1-CPT2 (G3) .
[0367] In another experiment, about 1×106 NCI-H524 cells were injected subcutaneously in B-NDG mice, and when the tumor volume grew to about 200 mm3, the mice were divided to different groups based on tumor size (5 mice per group) . The mice were then injected with PBS (G1) , 2 mg / kg ISO-CPT2 (G2) , 2 mg / kg ISO-Dxd (G3) , 12 mg / kg Ref1-Dxd (G4) , 2 mg / kg Ref1-CPT2 (G5) , or 2 mg / kg 2A2-21A9-CPT2 (G6) by i. v. administration on Day 1 (1 day after grouping) and Day 8.
[0368] The tumor volume was measured twice a week. The results showed that 2A2-21A9-CPT2 (G6) had the best tumor inhibitory effect compared to the control groups G1-G5. Specifically, the TGI% (e.g., on Day 21) of G2-G6 was 27.4%, 27.0%, 89.2%, 94.5%, and 107.2%, respectively.
[0369] Example 12. Anti-Tumor Activity in lung cancer PDX model
[0370] The anti-tumor activity of ADCs was tested in vivo in a lung cancer PDX model. Specifically, lung tumor fragments (2 mm×2 mm×2 mm) were engrafted in the right flank of B-NDG mice. When the tumor volume reached about 200-300 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) , ISO-CPT2 (G2) , ISO-Dxd(G3) , Ref1-Dxd (G4) , or 2A2-21A9-CPT2 (G5) by i.v. administration. The frequency of administration was once a week (1 administration in total) .
[0371] The tumor volumes were measured twice a week. As shown in FIG. 10, 2A2-21A9-CPT2 (G5) exhibited better anti-tumor activity than that of the positive control group Ref1-Dxd (G4) , with TGI%of 84.3%and 51.5%respectively on Day 24.
[0372] Example 13. Anti-Tumor Activity in breast cancer PDX model
[0373] The anti-tumor activity of ADCs was tested in vivo in a breast cancer PDX model (with DLL3 and B7H3 expression levels of-0.76 and 3.89by RNA-seq) . Specifically, breast tumor fragments (2 mm×2 mm×2 mm) were engrafted in the right flank of B-NDG mice. When the tumor volume reached about 200-300 mm3, the mice were randomly placed into different groups based on tumor volumes (5 mice per group) . The mice were then injected with PBS (G1) , ISO-CPT2 (G2) , Ref1-CPT2 (G3) , 2A2-21A9-CPT2 (G4) , 2BL2-21A9-CPT2 (G5) , or 2A2-20H8-CPT2 (G6) by i. v. administration. The frequency of administration was once a week (1 administration in total) .
[0374] The tumor volumes were measured twice a week. As shown in FIG. 11, all the anti-DLL3 / B7H3 ADCs (G4-G6) exhibited better anti-tumor activity than that of the positive controls ISO-CPT2 (G2) and Ref1-CPT2 (G3) . Specifically, the TGI% (e.g., on Day 21) of G4-G6 was 114.8%, 113.3%, and 114.0%respectively, which were higher than that of G3 (95.0%) , indicating that 2A2-21A9-CPT2, 2BL2-21A9-CPT2, and2A2-20H8-CPT2 exhibited good tumor inhibitory effect in breast cancer model.
[0375] OTHER EMBODIMENTS
[0376] It is to be understood that while the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.
Claims
An anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof, comprising: a first antigen-binding domain that specifically binds to DLL3; and a second antigen-binding domain that specifically binds to B7H3.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of claim 1, wherein the first antigen-binding domain comprises a first heavy chain variable region (VH1) and a first light chain variable region (VL1) ; and the second antigen-binding domain comprises a second heavy chain variable region (VH2) and a second light chain variable region (VL2) .The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of claim 2, whereinthe VH1 comprises complementarity determining regions (CDRs) 1, 2, and 3, wherein the VH1 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR1 amino acid sequence, the VH1 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR2 amino acid sequence, and the VH1 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VH1 CDR3 amino acid sequence; andthe VL1 comprises CDRs 1, 2, and 3, wherein the VL1 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR1 amino acid sequence, the VL1 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR2 amino acid sequence, and the VL1 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VL1 CDR3 amino acid sequence,wherein the selected VH1 CDRs 1, 2, and 3 amino acid sequences, the selected VL1 CDRs 1, 2, and 3 amino acid sequences are one of the following:(1) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(2) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(3) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; and(4) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of claim 2 or 3, whereinthe VH2 comprises CDRs 1, 2, and 3, wherein the VH2 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR1 amino acid sequence, the VH2 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR2 amino acid sequence, and the VH2 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VH2 CDR3 amino acid sequence; andthe VL2 comprises CDRs 1, 2, and 3, wherein the VL2 CDR1 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR1 amino acid sequence, the VL2 CDR2 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR2 amino acid sequence, and the VL2 CDR3 comprises an amino acid sequence that is at least 80%identical to a selected VL2 CDR3 amino acid sequence,wherein the selected VH2 CDRs 1, 2, and 3 amino acid sequences, and the selected VL2 CDRs 1, 2, and 3 amino acid sequences are one of the following:(1) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(2) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(3) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; and(4) the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-4, wherein(1) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(2) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 4-6, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(3) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(4) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 16-18, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(5) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 10-12, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(6) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 7-9, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 13-15, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively;(7) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 22-24, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively; or(8) the selected VH1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 19-21, respectively, and the selected VL1 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively, and the selected VH2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 25-27, respectively, and the selected VL2 CDRs 1, 2, 3 amino acid sequences are set forth in SEQ ID NOs: 1-3, respectively.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-5, wherein the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 29, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 31, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-5, wherein the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 29, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 32, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-5, wherein the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 30, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 31, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-5, wherein the first heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 30, the first light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28, the second heavy chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 32, and the second light chain variable region comprises a sequence that is at least 80%, 85%, 90%, 95%, 99%, or 100%identical to SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-9, wherein the VH1 comprises an amino acid sequence that is at least 90%identical to a selected VH sequence, and the VL1 comprises an amino acid sequence that is at least 90%identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:(1) the selected VH sequence is SEQ ID NO: 29, and the selected VL sequence is SEQ ID NO: 28; and(2) the selected VH sequence is SEQ ID NO: 30, and the selected VL sequence is SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-10, wherein the VH1 comprises VH1 CDR1, VH1 CDR2, and VH1 CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence; and the VL1 comprising VL1 CDR1, VL1 CDR2, and VL1 CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:(1) the selected VH sequence is SEQ ID NO: 29, and the selected VL sequence is SEQ ID NO: 28; and(2)the selected VH sequence is SEQ ID NO: 30, and the selected VL sequence is SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-11, wherein the VH2 comprises an amino acid sequence that is at least 90%identical to a selected VH sequence, and the VL2 comprises an amino acid sequence that is at least 90%identical to a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:(1) the selected VH sequence is SEQ ID NO: 31, and the selected VL sequence is SEQ ID NO: 28; and(2)the selected VH sequence is SEQ ID NO: 32, and the selected VL sequence is SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-12, wherein the VH2 comprises VH2 CDR1, VH2 CDR2, and VH2 CDR3 that are identical to VH CDR1, VH CDR2, and VH CDR3 of a selected VH sequence; and the VL2 comprising VL2 CDR1, VL2 CDR2, and VL2 CDR3 that are identical to VL CDR1, VL CDR2, and VL CDR3 of a selected VL sequence, wherein the selected VH sequence and the selected VL sequence are one of the following:(1) the selected VH sequence is SEQ ID NO: 31, and the selected VL sequence is SEQ ID NO: 28; and(2)the selected VH sequence is SEQ ID NO: 32, and the selected VL sequence is SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-13, wherein the VH1 comprises the sequence of SEQ ID NO: 29 and the VL1 comprises the sequence of SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-13, wherein the VH1 comprises the sequence of SEQ ID NO: 30 and the VL1 comprises the sequence of SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-15, wherein the VH2 comprises the sequence of SEQ ID NO: 31 and the VL2 comprises the sequence of SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-15, wherein the VH2 comprises the sequence of SEQ ID NO: 32 and the VL2 comprises the sequence of SEQ ID NO: 28.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-17, wherein the first antigen-binding domain specifically binds to human or monkey DLL3; and / or the second antigen-binding domain specifically binds to human or monkey B7H3.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-18, wherein the first antigen-binding domain is human or humanized; and / or the second antigen-binding domain is human or humanized.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-19, wherein the antibody is a multispecific antibody (e.g., a bispecific antibody) .The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-20, wherein the first antigen-binding domain is a single-chain variable fragment (scFv) ; and / or the second antigen-binding domain is a scFv.The anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 2-21, wherein the first light chain variable region and the second light chain variable region are identical.An anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof that cross-competes with the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-22.A nucleic acid comprising a polynucleotide encoding the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23.A vector comprising the nucleic acid of claim 24.A cell comprising the vector of claim 25.The cell of claim 26, wherein the cell is a CHO cell.A cell comprising the nucleic acid of claim 24.A method ofproducing an anti-DLL3 / B7H3 antibody or an antigen-binding fragment thereof, the method comprising(a) culturing the cell of any one of claims 26-28 under conditions sufficient for the cell to produce the anti-DLL3 / B7H3 antibody or the antigen-binding fragment thereof; and(b) collecting the anti-DLL3 / B7H3 antibody or the antigen-binding fragment thereofproduced by the cell.An anti-DLL3 / B7H3 antibody-drug conjugate (ADC) comprising a therapeutic agent covalently bound to the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23.The anti-DLL3 / B7H3 antibody drug conjugate of claim 30, wherein the therapeutic agent is a cytotoxic or cytostatic agent.The anti-DLL3 / B7H3 antibody drug conjugate of claim 30 or 31, wherein the therapeutic agent is MMAE or MMAF.The antibody-drug conjugate of claim 30 or 31, wherein the therapeutic agent is selected fromThe antibody-drug conjugate of any one of claims 30-33, wherein the therapeutic agent is linked to the antibody or antigen-binding fragment thereof via a linker.The antibody-drug conjugate of claim 34, wherein the linker has a structure of:The antibody-drug conjugate of any one of claims 30-31 and 33-35, wherein the antibody-drug conjugate has a structure of:wherein n=1-8; wherein “Ab” represents the antibody or antigen-binding fragment thereof.A method of treating a subject having cancer, the method comprising administering a therapeutically effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23, or the anti-DLL3 / B7H3 antibody-drug conjugate of any one of claims 30-36, to the subject.The method of claim 37, wherein the subject has a cancer expressing DLL3 and / or B7H3 (e.g., both DLL3 and B7H3) .The method of claim 37 or claim 38, wherein the cancer is neuroendocrine cancer, epidermoid carcinoma, liver cancer, pancreatic cancer, prostate cancer, osteosarcoma, breast cancer, colorectal cancer, stomach cancer, ovarian cancer, endometrial cancer, oral squamous cell carcinoma, cervical cancer, small cell lung cancer (SCLC) , non-small cell lung cancer (NSCLC) , bladder cancer, renal cancer, brain cancer, head and neck cancer, or melanoma.The method of any one of claims 37-39, wherein the subject is a human.A method of decreasing the rate of tumor growth, the method comprising contacting a tumor cell with an effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23, or the anti-DLL3 / B7H3 antibody-drug conjugate of any one of claims 30-36.A method of killing a tumor cell, the method comprising contacting a tumor cell with an effective amount of a composition comprising the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23, or the anti-DLL3 / B7H3 antibody-drug conjugate of any one of claims 30-36.A pharmaceutical composition comprising a pharmaceutically acceptable carrier and(a) the anti-DLL3 / B7H3 antibody or antigen-binding fragment thereof of any one of claims 1-23, and / or(b) the anti-DLL3 / B7H3 antibody-drug conjugate of any one of claims 30-36.An anti-DLL3 / B7H3 antibody-drug conjugate (ADC) comprising a therapeutic agent covalently bound to a bispecific antibody or antigen-binding fragment thereof comprising: a first antigen-binding domain that specifically binds to DLL3, and a second antigen-binding domain that specifically binds to B7H3.