3α-HSDH Mutants for UDCA Synthesis

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Solution Overview

Problem

Current methods for producing ursodeoxycholic acid (UDCA) face challenges such as incomplete conversion due to reaction equilibria and the need for multiple enzymes with different cofactor dependencies, leading to increased costs and complexity in the synthesis process.

Innovation Solution

Development of improved 3α-hydroxysteroid dehydrogenase (3α-HSDH) mutants from Comamonas testosteroni that can stereospecifically reduce dehydrocholic acid, allowing for enhanced activity and cofactor utilization, including the ability to use NADPH instead of NADH, and simultaneous or staggered reduction with 7β-HSDH, along with cofactor regeneration using dehydrogenases.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Ease of manufacture

If multiple enzymes with different cofactor dependencies are used for UDCA synthesis, then the synthesis pathway can be completed, but the process complexity and costs increase

Engineering Contradiction:
Improvesynthesis process simplicityVSAvoidenzyme system complexity
Core Design Contradiction:
Ease of manufactureVSDevice complexity

Solution Approach 1:

The 3α-HSDH enzyme from Comamonas testosteroni is engineered to accept both NADH and NADPH as cofactors, making it universally functional in positions that traditionally required multiple different enzymes. This multi-cofactor capability allows a single enzyme to perform functions that previously required multiple specialized enzymes, thereby simplifying the overall synthesis system while maintaining complete pathway functionality

Inventive Principle:
Principle #6Universality (Multi-functionality)

2Productivity

If traditional 3α-HSDH is used for dehydrocholic acid reduction, then the reaction can proceed, but substrate inhibition limits conversion efficiency

Engineering Contradiction:
Improveconversion efficiencyVSAvoidsubstrate inhibition
Core Design Contradiction:
ProductivityVSObject-generated harmful factors

Solution Approach 1:

The enzyme's kinetic parameters are modified through directed evolution and rational design to change its interaction with the substrate. Specifically, mutations are introduced that alter the enzyme's substrate binding characteristics and reduce inhibitory effects, thereby improving conversion efficiency without requiring changes to the overall reaction conditions or substrate concentration regimes

Inventive Principle:
Principle #35Parameter changes

3Ease of manufacture

If NADH-dependent 3α-HSDH is used, then the enzymatic reduction can occur, but cofactor regeneration becomes more complex and costly

Engineering Contradiction:
Improvecofactor regeneration simplicityVSAvoidcofactor regeneration cost
Core Design Contradiction:
Ease of manufactureVSUse of energy by moving object

Solution Approach 1:

The 3α-HSDH enzyme is engineered with extended cofactor specificity to accept both NADH and NADPH. This universality provides flexibility in cofactor regeneration strategies, allowing the system to use whichever cofactor system is more economically viable or easier to regenerate in a given process configuration, thereby simplifying overall process design and reducing costs

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The improved 3α-HSDH mutants demonstrate increased specific activity and reduced substrate inhibition, enabling more efficient and cost-effective production of UDCA with improved cofactor utilization and simplified cofactor regeneration, thereby enhancing the UDCA synthesis process.

Implementation Method 1

3α-hydroxysteroid dehydrogenase mutants and process for the preparation of ursodeoxycholic acid

Methodology Applied
Scientific EffectEnzymatic catalysis: Enzyme

Implementation Method 2

The enzyme from C. testosteroni has proved to be a very suitable 3α-HSDH. The gene sequence of this enzyme is now known, so that firstly the enzyme can be made available recombinantly after cloning; secondly, it is possible to generate mutants of this enzyme by protein engineering methods

Methodology Applied
Scientific EffectStereospecific reduction: Reduction

Data Source

PatentUS11306343B23α-hydroxysteroid dehydrogenase mutants and process for the preparation of ursodeoxycholic acid
Publication Date: 2022.04.19 PHARMAZELL GMBH
  • US11306343B2 patent drawing
  • US11306343B2 patent drawing
  • US11306343B2 patent drawing

AI summary

The invention provides novel 3α-hydroxysteroid dehydrogenase mutants, sequences that code for these enzyme mutants, methods for producing the enzyme mutants, and the use thereof in enzymatic reactions of cholic acid compounds, and in particular in the production of ursodeoxycholic acid (UDCA). The invention further provides processes for the synthesis of UDCA using the enzyme mutants and the production of UDCA using recombinant microorganisms that have been subjected to multiple modifications.