AAV Capsid Antibody Evasion via Antigenic Modification

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Solution Overview

Problem

Existing AAV vectors face challenges in evading neutralizing antibodies, limiting their repeated administration in gene therapy and vaccine applications due to pre-existing antibodies in the human population.

Innovation Solution

Modification of AAV capsid proteins with specific amino acid substitutions or deletions to alter antigenic sites, allowing the vectors to evade neutralizing antibodies while maintaining transduction efficiency.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If AAV vectors are used for gene therapy, then transduction efficiency is achieved, but neutralizing antibodies prevent repeated administration

Engineering Contradiction:
Improvetransduction efficiencyVSAvoidrepeated administration capability
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The patent modifies the capsid proteins by changing amino acid sequences at specific positions (e.g., positions 70-80, 140-150, 210-220) to alter the antigenic properties of the virus. These parameter changes in the protein sequence enable the virus to evade neutralizing antibodies while maintaining transduction efficiency, allowing repeated administrations.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The capsid protein is divided into multiple antigenic sites (first antigenic site, second antigenic site, third antigenic site) that can be independently modified. By segmenting the antigenic regions and modifying each separately, the patent achieves antibody evasion while preserving the functional integrity of the capsid for efficient transduction.

Inventive Principle:
Principle #1Segmentation

2Object-affected harmful factors

If capsid proteins are modified to evade antibodies, then antibody evasion is achieved, but transduction efficiency may decrease

Engineering Contradiction:
Improveantibody recognitionVSAvoidtransduction efficiency
Core Design Contradiction:
Object-affected harmful factorsVSProductivity

Solution Approach 1:

The patent applies local modifications to specific antigenic regions of the capsid protein while maintaining the overall structure and function of the capsid. By making localized changes at specific positions rather than global modifications, the patent achieves antibody evasion at the surface level while preserving the transduction functionality in the core.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The modified capsid proteins exhibit dynamic conformational changes that allow them to evade antibody recognition while maintaining their ability to bind to cellular receptors for transduction. The flexibility in the capsid structure enables it to adapt to different cellular environments.

Inventive Principle:
Principle #15Dynamics

Data Source

PatentUS20250092095A1Antibody-evading virus vectors
Publication Date: 2025.03.20 GINKGO BIOWORKS INC
  • US20250092095A1 patent drawing
  • US20250092095A1 patent drawing
  • US20250092095A1 patent drawing

AI summary

The present disclosure provides AAV capsid proteins comprising a modification in the amino acid sequence and virus vectors comprising the modified AAV capsid protein. The disclosure also provides methods of administering the virus vectors and virus capsids of the disclosure to a cell or to a subject in vivo.