AAV Capsid Engineering for NPC1 Gene Therapy

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Solution Overview

Problem

There is an urgent need for effective treatments, prevention, and potential cures for Niemann-Pick Disease Type C (NPC1), a neurodegenerative disorder characterized by cholesterol accumulation, as current therapies are inadequate.

Innovation Solution

Development of recombinant adeno-associated virus (AAV) vectors that evade neutralizing antibodies and selectively target tissues, carrying a nucleic acid with a transfer cassette encoding the NPC1 protein to treat, prevent, or cure NPC1, utilizing specific capsid protein subunits and sequences to enhance transduction efficiency and tissue specificity.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If neutralizing antibodies are present in the host, then immune response is activated, but transduction efficiency decreases

Engineering Contradiction:
Improveimmune evasion capabilityVSAvoidtransduction efficiency
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent modifies the capsid protein sequence parameters by introducing amino acid substitutions at specific positions (e.g., positions 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100) to create variants that evade neutralizing antibodies while preserving transduction efficiency. This parameter change approach allows the vector to adapt to immune pressure without sacrificing its core function.

Inventive Principle:
Principle #35Parameter changes

2Manufacturing precision

If tissue specificity is enhanced to target specific organs, then therapeutic precision improves, but vector design complexity increases

Engineering Contradiction:
Improvetissue targeting precisionVSAvoidvector construction complexity
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The patent achieves tissue specificity by making localized modifications to the capsid protein structure at specific regions (N-terminal, C-terminal, or internal domains) rather than redesigning the entire vector. This allows different capsid variants to be created for targeting different tissues (liver, brain, heart, muscle) by modifying only the relevant local regions of the capsid protein.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The capsid protein is divided into functional segments (VP1, VP2, VP3 with distinct domains) that can be independently modified. This segmentation allows researchers to target specific regions for tissue tropism optimization without affecting other critical functions of the capsid.

Inventive Principle:
Principle #1Segmentation

3Productivity

If transduction efficiency is increased to deliver more therapeutic cargo, then treatment effectiveness improves, but immune recognition increases

Engineering Contradiction:
Improvetransduction efficiencyVSAvoidimmune recognition
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent uses systematic parameter changes in the capsid protein sequence to create variants with altered immune recognition profiles. By changing specific amino acid residues that are epitopes for neutralizing antibodies, the vectors can achieve high transduction efficiency while evading immune detection and neutralization.

Inventive Principle:
Principle #35Parameter changes

Data Source

PatentUS11905523B2Adeno-associated viral vectors for treatment of Niemann-Pick Disease type-C
Publication Date: 2024.02.20 GINKGO BIOWORKS INC
  • US11905523B2 patent drawing
  • US11905523B2 patent drawing
  • US11905523B2 patent drawing

AI summary

Provided herein are gene therapy compositions and methods for treating, preventing, and/or curing NPC1. More specifically, the disclosure provides Adeno-associated virus (AAV) vectors for delivery of nucleic acids and nucleic acids (including AAV transfer cassettes) for treating, preventing, and/or curing NPC1.