Affinity Grid Coatings for Stable Cryo-EM Protein Capture

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Solution Overview

Problem

Current methods for sample preparation in single particle cryo-electron microscopy are inefficient, particularly in maintaining grid stability and reducing beam-induced motion, and existing affinity grids face limitations due to film instability and non-uniformity, which affects the resolution and quality of biological samples.

Innovation Solution

Development of a modified TEM grid coating with capture agents and deactivating agents, such as graphene oxide-nitrilotriacetic acid (GO-NTA) and bovine serum albumin (BSA), to selectively capture target proteins while preventing non-specific binding, enhancing grid rigidity and resolution.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If lipid monolayer affinity grids are used for on-grid purification, then selective capture of target proteins is improved, but film stability and uniformity deteriorate

Engineering Contradiction:
Improveselective capture capabilityVSAvoidfilm stability
Core Design Contradiction:
Measurement precisionVSReliability

Solution Approach 1:

The patent uses composite materials by combining graphene oxide with NTA (nitrilotriacetic acid) to create a stable affinity coating. The graphene oxide provides structural stability and mechanical support, while NTA provides the affinity capture capability for histidine-tagged proteins. This composite approach resolves the contradiction by integrating the stabilizing function of graphene oxide with the selective capture function of NTA, achieving both film stability and selective capture capability simultaneously.

Inventive Principle:
Principle #40Composite materials

2Loss of time

If affinity grids are used for on-grid purification, then sample preparation time is reduced, but non-specific binding increases

Engineering Contradiction:
Improvesample preparation timeVSAvoidnon-specific binding
Core Design Contradiction:
Loss of timeVSObject-generated harmful factors

Solution Approach 1:

The patent applies local quality by functionalizing specific regions of the graphene oxide surface with NTA groups. The graphene oxide provides a stable base structure, while the NTA-functionalized regions provide selective affinity capture. This localized functional approach allows the grid to maintain stability across the entire surface while providing selective capture only at the functionalized sites, reducing non-specific binding compared to uniform affinity coatings.

Inventive Principle:
Principle #3Local quality

3Manufacturing precision

If traditional purification methods are used, then protein purity is improved, but preparation time and complexity increase

Engineering Contradiction:
Improveprotein purityVSAvoidpreparation time
Core Design Contradiction:
Manufacturing precisionVSLoss of time

Solution Approach 1:

The patent merges the purification function with the grid coating itself. Instead of using separate purification steps before grid preparation, the affinity-functionalized graphene oxide coating performs on-grid purification during sample application. This integration of purification and grid preparation functions reduces the number of separate steps, decreasing overall preparation time while maintaining protein purity through selective affinity capture.

Inventive Principle:
Principle #5Merging (Combining)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The modified grids achieve higher resolution and stability, allowing for effective affinity capture and structural analysis of proteins at resolutions between 1 Å and 10 Å, improving the signal-to-noise ratio and reducing interference from contaminants.

Implementation Method 1

contacting a grid comprising a coating modified with one or more capture agents with a cell lysate comprising proteins

Methodology Applied
Scientific EffectAffinity binding: Adsorption

Implementation Method 2

a grid comprising a coating modified with one or more capture agents and further comprising a deactivating agent

Methodology Applied
Scientific EffectNon-specific binding prevention: Adsorption

Data Source

PatentUS11965851B2Grid coatings for capture of proteins and other compounds
Publication Date: 2024.04.23 PURDUE RES FOUND
  • US11965851B2 patent drawing
  • US11965851B2 patent drawing
  • US11965851B2 patent drawing

AI summary

Methods of using grids in connection with suitable microscopy techniques, such as for determining the structure of target compounds including proteins, are disclosed. Said grid comprising a coating modified with one or more capture agents and a deactivating agent.