Affinity Chromatography-Native MS for Fast Antibody Impurity Analysis

Resolve Bottlenecks,
Find Innovative Solutions
Generate Solutions

Solution Overview

Problem

Existing methods are inadequate for rapidly and sensitively analyzing therapeutic peptides or proteins to detect post-translational modifications, impurities, and drug-to-antibody ratios in biopharmaceutical products, which affect safety, efficacy, and shelf-life.

Innovation Solution

Affinity-based chromatography-coupled native mass spectrometry methods and systems for high-throughput analysis, utilizing affinity-binding molecules like protein A or FcγRIIIa, to characterize peptides or proteins under native conditions, enabling rapid identification and quantification of modifications and impurities.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If conventional analytical methods are used for characterizing therapeutic peptides or proteins, then the analysis can be conducted with standard equipment, but the analysis time is long and the sensitivity is insufficient to detect post-translational modifications and impurities

Engineering Contradiction:
Improvedetection sensitivityVSAvoidanalysis time
Core Design Contradiction:
Measurement precisionVSLoss of time

Solution Approach 1:

The patent combines affinity-based chromatography with native mass spectrometry into a coupled system, where the chromatography column is directly connected to the mass spectrometer. This integration allows simultaneous separation and high-sensitivity detection, achieving both rapid analysis and high detection sensitivity for post-translational modifications and impurities without requiring separate analysis steps.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The patent employs native mass spectrometry conditions that maintain physiological pH and temperature, enabling detection of intact proteins and their modifications with high sensitivity. The mass spectrometer operates in native mode to preserve protein structure while achieving rapid analysis, resolving the contradiction between detection sensitivity and analysis time.

Inventive Principle:
Principle #35Parameter changes

2Reliability

If extensive characterization is performed to ensure product quality, then safety and efficacy are preserved, but the characterization process is time-consuming and reduces productivity

Engineering Contradiction:
Improveproduct qualityVSAvoidmanufacturing throughput
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The coupled chromatography-mass spectrometry system enables continuous analysis without intermediate steps. The chromatography separation flows directly into the mass spectrometer for detection, creating a continuous workflow that maintains product quality through extensive characterization while significantly reducing analysis time and increasing manufacturing throughput.

Inventive Principle:
Principle #20Continuity of useful action

Solution Approach 2:

The patent replaces traditional mechanical separation and detection methods with a coupled system where mass spectrometry provides rapid, sensitive detection. This substitution enables comprehensive quality characterization to be performed much faster, resolving the contradiction between ensuring product quality and maintaining manufacturing productivity.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

3Productivity

If high-throughput analytical methods are developed to improve manufacturing process monitoring, then productivity increases, but the device complexity and method sophistication increase

Engineering Contradiction:
Improveanalysis throughputVSAvoidsystem complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The coupled chromatography-mass spectrometry system serves multiple functions simultaneously: separation, detection, and characterization of therapeutic proteins and their modifications. This multi-functional integration achieves high-throughput analysis while consolidating what would otherwise require multiple separate instruments and methods, managing system complexity through functional integration.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Provides rapid, sensitive, and high-throughput analysis of peptides or proteins, allowing for effective monitoring and control of biopharmaceutical production and purification processes, including characterization of drug-to-antibody ratios and post-translational modifications.

Implementation Method 1

contacting the sample to a solid surface, wherein the solid surface comprises an affinity-binding molecule of the at least one peptide or protein

Methodology Applied
Scientific EffectAffinity binding: Absorption (physical)

Implementation Method 2

characterizing the at least one peptide or protein in the at least one eluent under native conditions using a mass spectrometer

Methodology Applied
Scientific EffectMass spectrometry: Ionisation

Implementation Method 3

washing the solid surface using a mobile phase to produce at least one eluent, wherein the eluent comprises the at least one peptide or protein

Methodology Applied
Scientific EffectChromatography: Chromatography

Data Source

PatentUS12535490B2Affinity chromatography-coupled native mass spectrometry for antibody analysis
Publication Date: 2026.01.27 REGENERON PHARMACEUTICALS INC
  • US12535490B2 patent drawing
  • US12535490B2 patent drawing
  • US12535490B2 patent drawing

AI summary

The present invention provides rapid, sensitive high-throughput methods and systems for characterizing peptides or proteins using affinity-based chromatography-coupled native mass spectrometry to improve manufacturing process of biopharmaceutical products, such as identifying impurities during antibody purification, monitoring post-translational modification variants during production, or characterizing drug-to-antibody ratio of antibody-drug conjugates. The separation profiles of the peptides or proteins are generated and compared to identify or qualify the peptides or proteins, wherein the separation profile is based on differential affinity binding.