Amatoxin Conjugates Plasma Stability via Linker Segmentation

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Solution Overview

Problem

Current antibody-drug conjugates (ADCs) face challenges in delivering potent RNA polymerase inhibitors to cancer cells while maintaining stability in plasma, which affects the therapeutic window and safety, with limited stability of amatoxin conjugates prior to internalization.

Innovation Solution

Development of novel cytotoxic cyclic peptides, analogs of alpha-amanitin and beta-amanitin, for use in antibody-drug conjugates, specifically modifying the 7′ position of the indole ring with a CH2SH moiety and linker components to facilitate attachment to antibodies, enhancing stability and targeted delivery.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If amatoxin conjugates are used as ADC payloads to inhibit RNA polymerase, then cytotoxic activity against cancer cells is improved, but stability in plasma prior to internalization deteriorates

Engineering Contradiction:
Improvecytotoxic activityVSAvoidstability in plasma
Core Design Contradiction:
ReliabilityVSStability of the object's composition

Solution Approach 1:

A plasma-stable linker is introduced as an intermediary component between the amatoxin payload and the antibody. This linker maintains the integrity of the conjugate in plasma circulation while allowing controlled release of the cytotoxic amatoxin payload upon internalization into target cells, thus resolving the contradiction between plasma stability and cytotoxic activity.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The ADC is segmented into distinct functional components: a plasma-stable linker segment, an antigen-binding antibody segment, and a cytotoxic amatoxin payload segment. This segmentation allows each component to perform its specific function optimally - the linker provides plasma stability while the payload delivers cytotoxic activity upon release.

Inventive Principle:
Principle #1Segmentation

2Productivity

If amatoxin conjugates are delivered to cancer cells, then inhibition of cell proliferation is improved, but therapeutic window and safety deteriorate due to limited stability

Engineering Contradiction:
Improveinhibition of cell proliferationVSAvoidsafety and therapeutic window
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The plasma-stable linker acts as a protective intermediary that prevents premature release of the toxic amatoxin payload in circulation, thereby improving safety and expanding the therapeutic window. The linker ensures the payload is delivered intact to target cells before release, reducing off-target effects.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The chemical parameters of the linker are specifically designed to be stable under plasma conditions (pH 7.4, presence of proteases) but become labile under intracellular conditions (endosomal/lysosomal pH, enzymatic environment). This parameter change enables selective payload release at the target site, improving both efficacy and safety.

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The novel cytotoxic cyclic peptides improve the stability and targeted delivery of RNA polymerase inhibitors to cancer cells, effectively inhibiting cell proliferation and treating cancer with enhanced safety and therapeutic efficacy.

Implementation Method 1

modifying the 7′ position of the indole ring with a CH2SH moiety and linker components to facilitate attachment to antibodies

Methodology Applied
Scientific EffectChemical Bonding: Chemical Bonding

Implementation Method 2

Amatoxins are potent and selective inhibitors of RNA polymerase II, a vital enzyme in the synthesis of messenger RNA (mRNA), microRNA, and small nuclear RNA (snRNA). By inhibiting the synthesis of mRNA, Amatoxins thereby stop cell metabolism by inhibiting transcription and protein biosynthesis

Methodology Applied
Scientific EffectEnzyme inhibition: Enzyme

Data Source

PatentUS10604547B2Amatoxin derivatives and conjugates thereof as inhibitors of RNA polymerase
Publication Date: 2020.03.31 NOVARTIS AG
  • US10604547B2 patent drawing
  • US10604547B2 patent drawing
  • US10604547B2 patent drawing

AI summary

The invention disclosed herein relates to cytotoxic cyclic peptides of Formula (A), methods of inhibiting RNA polymerase with such cyclic peptides, immunoconjugates comprising such cyclic peptides (i.e Antibody Drug Conjugates), pharmaceutical compositions comprising such cyclic peptides immunoconjugates, compositions comprising such cyclic peptides immunoconjugates with a therapeutic co-agent and methods of treatment using such cyclic peptides immunoconjugates: