Electrochemical Aptamer Sensing for Rapid Pathogen Detection

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Solution Overview

Problem

Existing methods for detecting plant pathogens like rust fungi are time-consuming, require skilled technicians, and are not suitable for real-time on-field conditions due to their complexity and reliance on sensitive biomaterials.

Innovation Solution

A method using electrochemical sensing with gas-permeable electrodes, functional groups, and aptamers to selectively bind pathogenic organisms, followed by an electrochemically detectable reaction to generate an electric signal indicative of their presence.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If traditional DNA-based or immunological methods are used for pathogen detection, then measurement precision is improved, but device complexity and time consumption increase significantly

Engineering Contradiction:
Improvedetection sensitivityVSAvoidmethod complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent extracts and utilizes specific functional groups (catechol, carboxyl, amino, hydroxyl) that are naturally present on pathogenic organism surfaces, eliminating the need for complex DNA extraction or antibody preparation steps. This extraction of key identifying features enables simple electrochemical detection while maintaining high detection sensitivity.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent replaces complex biological detection systems (DNA amplification, antibody-antigen reactions) with a straightforward electrochemical sensing system. The functional groups on the electrode surface directly interact with pathogenic organisms through electrochemical reactions, substituting mechanical and biological complexity with electrical measurement simplicity.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Ease of operation

If traditional field observation methods are used, then ease of operation is maintained, but measurement precision and reliability deteriorate due to subjective interpretation

Engineering Contradiction:
Improveoperational simplicityVSAvoiddetection accuracy
Core Design Contradiction:
Ease of operationVSMeasurement precision

Solution Approach 1:

The patent replaces subjective visual observation with objective electrochemical measurement. The electrode generates electrical signals that directly indicate pathogen presence, eliminating human interpretation variability while maintaining simple field operation. The measurement is automatically quantified through electrochemical current or potential readings.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent utilizes electrochemical signal changes (analogous to color changes in other detection methods) to indicate pathogen presence. The electrochemical response provides a clear, objective signal that is easy to detect and interpret in the field, combining operational simplicity with measurement precision.

Inventive Principle:
Principle #32Color changes

3Measurement precision

If complex laboratory methods are used, then measurement precision is improved, but productivity and speed of detection decrease

Engineering Contradiction:
Improvedetection sensitivityVSAvoiddetection speed
Core Design Contradiction:
Measurement precisionVSProductivity

Solution Approach 1:

The patent extracts only the essential electrochemical interaction between functional groups and pathogenic organisms, eliminating time-consuming intermediate steps such as DNA amplification, purification, or antibody incubation. This direct interaction enables rapid detection while maintaining sensitivity through the specificity of functional group binding.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The pathogenic organisms themselves provide the detection signal through their inherent functional groups on the surface. No external labeling, tagging, or complex preparation is needed—the organisms naturally exhibit electrochemical activity that can be directly measured, enabling rapid detection without sacrificing sensitivity.

Inventive Principle:
Principle #25Self-service

4Measurement precision

If expensive sensitive biomaterials are used, then measurement precision is improved, but cost-effectiveness deteriorates

Engineering Contradiction:
Improvedetection sensitivityVSAvoidcost-effectiveness
Core Design Contradiction:
Measurement precisionVSEase of manufacture

Solution Approach 1:

The patent employs a simple electrochemical electrode that can be manufactured at low cost using common materials. The electrode surface is modified with functional groups that provide selective binding, replacing expensive antibodies or enzymes. The system achieves high sensitivity through the specificity of electrochemical interactions rather than through costly biomaterials.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Solution Approach 2:

The patent substitutes expensive biological recognition elements (antibodies, enzymes, DNA probes) with electrochemical sensing mechanisms. The functional groups on the electrode surface provide specific recognition of pathogenic organisms through electrochemical reactions, achieving the same detection precision at a fraction of the material cost.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables rapid, cost-effective, and highly sensitive detection of pathogenic organisms with high selectivity, suitable for real-time on-field conditions.

Implementation Method 1

contacting a sample suspected as containing the pathogenic organism or a portion thereof with an electrode, to thereby absorb the pathogenic organism or a portion thereof, if present in the sample, to at least a portion of a surface of the electrode

Methodology Applied
Scientific EffectAdsorption: Adsorption

Implementation Method 2

contacting the electrode with an aptamer that selectively binds to the pathogenic organism or the portion thereof

Methodology Applied
Scientific EffectMolecular recognition and binding:

Implementation Method 3

contacting the electrode with an agent that participates in an electrochemically detectable reaction; and subsequent to contacting the agent, performing the electrochemical reaction in the presence of the electrode, wherein an electric signal produced by the reaction is indicative

Methodology Applied
Scientific EffectElectrochemical reaction:

Data Source

PatentUS12517126B2Systems and methods for detecting a pathogenic organism
Publication Date: 2026.01.06 RAMOT AT TEL AVIV UNIVERSITY LTD
  • US12517126B2 patent drawing
  • US12517126B2 patent drawing
  • US12517126B2 patent drawing

AI summary

A method of detecting a presence, amount and/or type of a pathogenic organism in a substrate is provided. The method is effected by contacting a sample suspected as containing the pathogenic organism or a portion thereof with an electrode, thereafter contacting the electrode with an aptamer that selectively binds to said pathogenic organism; thereafter contacting the electrode with an agent that participates in an electrochemically detectable reaction and thereafter perform the electrochemical reaction while using the electrode. The electric signal produced by the reaction is indicative of a presence and/or amount of the pathogenic organism. Also provided are a sensing system and kits usable for practicing the method, and use of the method for determining a suitable agent for reducing a load of a pathogenic organism in a substrate.