Electrochemical Aptamer Sensing for Rapid Pathogen Detection
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Solution Overview
Problem
Existing methods for detecting plant pathogens like rust fungi are time-consuming, require skilled technicians, and are not suitable for real-time on-field conditions due to their complexity and reliance on sensitive biomaterials.
Innovation Solution
A method using electrochemical sensing with gas-permeable electrodes, functional groups, and aptamers to selectively bind pathogenic organisms, followed by an electrochemically detectable reaction to generate an electric signal indicative of their presence.
Engineering Contradictions & Design Principles
Engineering Contradiction Analysis
1Measurement precision
If traditional DNA-based or immunological methods are used for pathogen detection, then measurement precision is improved, but device complexity and time consumption increase significantly
Solution Approach 1:
The patent extracts and utilizes specific functional groups (catechol, carboxyl, amino, hydroxyl) that are naturally present on pathogenic organism surfaces, eliminating the need for complex DNA extraction or antibody preparation steps. This extraction of key identifying features enables simple electrochemical detection while maintaining high detection sensitivity.
Solution Approach 2:
The patent replaces complex biological detection systems (DNA amplification, antibody-antigen reactions) with a straightforward electrochemical sensing system. The functional groups on the electrode surface directly interact with pathogenic organisms through electrochemical reactions, substituting mechanical and biological complexity with electrical measurement simplicity.
2Ease of operation
If traditional field observation methods are used, then ease of operation is maintained, but measurement precision and reliability deteriorate due to subjective interpretation
Solution Approach 1:
The patent replaces subjective visual observation with objective electrochemical measurement. The electrode generates electrical signals that directly indicate pathogen presence, eliminating human interpretation variability while maintaining simple field operation. The measurement is automatically quantified through electrochemical current or potential readings.
Solution Approach 2:
The patent utilizes electrochemical signal changes (analogous to color changes in other detection methods) to indicate pathogen presence. The electrochemical response provides a clear, objective signal that is easy to detect and interpret in the field, combining operational simplicity with measurement precision.
3Measurement precision
If complex laboratory methods are used, then measurement precision is improved, but productivity and speed of detection decrease
Solution Approach 1:
The patent extracts only the essential electrochemical interaction between functional groups and pathogenic organisms, eliminating time-consuming intermediate steps such as DNA amplification, purification, or antibody incubation. This direct interaction enables rapid detection while maintaining sensitivity through the specificity of functional group binding.
Solution Approach 2:
The pathogenic organisms themselves provide the detection signal through their inherent functional groups on the surface. No external labeling, tagging, or complex preparation is needed—the organisms naturally exhibit electrochemical activity that can be directly measured, enabling rapid detection without sacrificing sensitivity.
4Measurement precision
If expensive sensitive biomaterials are used, then measurement precision is improved, but cost-effectiveness deteriorates
Solution Approach 1:
The patent employs a simple electrochemical electrode that can be manufactured at low cost using common materials. The electrode surface is modified with functional groups that provide selective binding, replacing expensive antibodies or enzymes. The system achieves high sensitivity through the specificity of electrochemical interactions rather than through costly biomaterials.
Solution Approach 2:
The patent substitutes expensive biological recognition elements (antibodies, enzymes, DNA probes) with electrochemical sensing mechanisms. The functional groups on the electrode surface provide specific recognition of pathogenic organisms through electrochemical reactions, achieving the same detection precision at a fraction of the material cost.
Applied Scientific Principles
This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.
Function Achieved in This Case
Enables rapid, cost-effective, and highly sensitive detection of pathogenic organisms with high selectivity, suitable for real-time on-field conditions.
Implementation Method 1
contacting a sample suspected as containing the pathogenic organism or a portion thereof with an electrode, to thereby absorb the pathogenic organism or a portion thereof, if present in the sample, to at least a portion of a surface of the electrode
Implementation Method 2
contacting the electrode with an aptamer that selectively binds to the pathogenic organism or the portion thereof
Implementation Method 3
contacting the electrode with an agent that participates in an electrochemically detectable reaction; and subsequent to contacting the agent, performing the electrochemical reaction in the presence of the electrode, wherein an electric signal produced by the reaction is indicative
Data Source
AI summary
A method of detecting a presence, amount and/or type of a pathogenic organism in a substrate is provided. The method is effected by contacting a sample suspected as containing the pathogenic organism or a portion thereof with an electrode, thereafter contacting the electrode with an aptamer that selectively binds to said pathogenic organism; thereafter contacting the electrode with an agent that participates in an electrochemically detectable reaction and thereafter perform the electrochemical reaction while using the electrode. The electric signal produced by the reaction is indicative of a presence and/or amount of the pathogenic organism. Also provided are a sensing system and kits usable for practicing the method, and use of the method for determining a suitable agent for reducing a load of a pathogenic organism in a substrate.


