Genetically Modified Bacteria Mucin Binding Gastrointestinal Retention

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Solution Overview

Problem

There is a need for microbial strains with improved pharmacokinetic and pharmacodynamic properties, and for targeted and controlled methods to treat various diseases using genetically modified bacteria that can effectively adhere to mucosal tissues and deliver therapeutic molecules.

Innovation Solution

Genetically modified microorganisms, such as bacteria or yeast, are engineered to express fusion proteins containing cell-adhesion and mucin-binding polypeptides like CmbA and trefoil factors, which enhance their ability to bind to intestinal epithelial cells and mucins, allowing for controlled delivery of bioactive molecules to the gastrointestinal tract.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If genetically modified bacteria are used to deliver therapeutic molecules to mucosal tissues, then therapeutic delivery capability is improved, but control over gastrointestinal retention and transit times is insufficient

Engineering Contradiction:
Improvetherapeutic delivery capabilityVSAvoidgastrointestinal retention time control
Core Design Contradiction:
ReliabilityVSLoss of time

Solution Approach 1:

The patent modifies the bacterial surface properties by expressing fusion proteins with altered adhesion characteristics. Specifically, bacteria are engineered to express fusion proteins containing cell-adhesion domains (such as CmbA from Lactobacillus reuteri) combined with therapeutic polypeptides. This changes the physical-chemical parameters of bacterial-mucosa interaction, enabling controlled retention. The modified bacteria demonstrate enhanced binding to intestinal epithelial cells and mucins, thereby extending gastrointestinal residence time in a controlled manner to improve therapeutic delivery reliability.

Inventive Principle:
Principle #35Parameter changes

2Reliability

If bacteria are engineered to express fusion proteins with cell-adhesion polypeptides, then adherence to intestinal mucosa is improved, but complexity of genetic modification increases

Engineering Contradiction:
Improveadherence to intestinal mucosaVSAvoidgenetic modification complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent combines multiple functional elements into a single fusion protein construct. The fusion protein merges a cell-adhesion domain (CmbA or similar adhesins from Gram-positive bacteria) with the therapeutic polypeptide sequence. This consolidation achieves two objectives simultaneously: (1) enhances bacterial adherence to intestinal mucosa through the adhesion domain, and (2) delivers the therapeutic payload through the integrated polypeptide. The genetic modification involves constructing this fusion gene and introducing it into the bacterial host, which, while requiring genetic engineering, simplifies the overall system compared to using separate adhesion-modified bacteria and separate therapeutic delivery mechanisms.

Inventive Principle:
Principle #5Merging (Combining)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The modified microorganisms exhibit increased adherence to intestinal mucosa and mucins, leading to prolonged gastrointestinal transit times and enhanced delivery of therapeutic peptides, thereby modulating pharmacokinetic and pharmacodynamic properties of bioactive molecules.

Implementation Method 1

bacteria exhibiting increased in vitro binding to Caco-2 cells, and increased in vitro binding to mucins

Methodology Applied
Scientific EffectCell-adherence: Adhesive

Implementation Method 2

expression, secretion and anchoring of a fusion protein containing a trefoil factor (TFF) and a cell-adhesion polypeptide, such as CmbA

Methodology Applied
Scientific EffectMucin-binding: Adhesive

Data Source

PatentUS12252516B2Mucoadhesive microorganism
Publication Date: 2025.03.18 INTREXON ACTOBIOTICS NV
  • US12252516B2 patent drawing
  • US12252516B2 patent drawing
  • US12252516B2 patent drawing

AI summary

The present disclosure provides genetically modified microorganisms (e.g., bacteria or yeast) with enhanced mucin-binding and/or cell-adhesion properties. For example, the present disclosure provides bacteria exhibiting increased in vitro binding to Caco-2 cells, and increased in vitro binding to mucins. Such microorganisms (e.g., bacteria) can be used, e.g., to deliver bioactive polypeptides to the gastrointestinal tract of a mammalian subject. Modifying the microorganism in the described manner allows for the modulation of gastrointestinal retention and transit times for the microorganism (e.g., bacterium). Exemplary microorganisms (e.g., lactic acid bacteria, such as Lactococcus lactis) contain an exogenous nucleic acid encoding a fusion protein containing a cell-adherence polypeptide, such as CmbA, and a mucin-binding polypeptide, such as a trefoil factor (TFF), e.g., human TFF3. The current disclosure further provides method for making and using the described microorganisms (e.g., bacteria).