CD3ε-Binding Polypeptide Variants for Affinity and Cross-Reactivity

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Solution Overview

Problem

There is a need for anti-CD3ε antibodies with diverse binding affinities and cross-reactivity to enhance therapeutic efficacy and safety, particularly for human and cynomolgus monkey applications, as existing antibodies like SP-34 are limited in variability.

Innovation Solution

Development of polypeptides comprising specific light and heavy chain variable domains that form antigen-binding domains targeting CD3ε, including single-chain and multi-chain configurations, along with anti-idiotypic antibodies, nucleic acids encoding these polypeptides, and methods for their production and administration.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Adaptability or versatility

If existing anti-CD3ε antibodies like SP-34 are used, then therapeutic applications can be implemented, but binding affinity variability and cross-reactivity are limited

Engineering Contradiction:
Improvebinding affinity variabilityVSAvoidnumber of antibody variants
Core Design Contradiction:
Adaptability or versatilityVSQuantity of substance

Solution Approach 1:

The patent segments the antibody structure into separate variable domains (VL and VH) that can be independently selected and combined from different parent antibodies. This modular approach allows creation of numerous variant combinations without requiring de novo development of each complete antibody, thus increasing binding affinity variability while managing the complexity of antibody development.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent changes the parameters of antibody variants by systematically varying the combination of VL and VH domains from different parent antibodies (e.g., SP-34, UCHT1, RPA-T1). This parameter variation approach generates diverse binding affinities and cross-reactivity profiles across multiple antibody variants without requiring complete redesign of each antibody.

Inventive Principle:
Principle #35Parameter changes

2Reliability

If multiple antibody variants are developed to achieve diverse binding affinities, then therapeutic efficacy can be improved, but development complexity increases

Engineering Contradiction:
Improvetherapeutic efficacyVSAvoidantibody development complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent creates a universal platform where a limited set of parent antibody variable domains can serve multiple functions by being combined in different pairings. The same VL domain from one parent antibody can pair with multiple different VH domains to generate variants with different binding characteristics, reducing development complexity while maintaining therapeutic efficacy.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Solution Approach 2:

The patent uses copying by selecting and recombining proven variable domains from well-characterized parent antibodies with known binding properties. Instead of developing entirely new antibodies, the invention copies and recombines existing functional domains to generate new variants with desired binding affinities and cross-reactivity profiles.

Inventive Principle:
Principle #26Copying

3Adaptability or versatility

If anti-CD3ε antibodies with human and cynomolgus monkey cross-reactivity are designed, then preclinical and clinical translation is enabled, but binding specificity may be compromised

Engineering Contradiction:
Improvecross-reactivityVSAvoidbinding specificity
Core Design Contradiction:
Adaptability or versatilityVSMeasurement precision

Solution Approach 1:

The patent applies local quality by making the antigen-binding domain (the local region formed by VL-VH pairing) specifically adapted for cross-reactivity while keeping the rest of the antibody structure consistent. By carefully selecting VL and VH domains with appropriate complementarity determining regions (CDRs), the invention achieves species-specific binding precision in the antigen-binding site while maintaining overall cross-reactivity capability.

Inventive Principle:
Principle #3Local quality

Data Source

PatentUS12545731B2Single-and multi-chain polypeptides that bind specifically to CD3 epsilon
Publication Date: 2026.02.10 CYTOMX THERAPEUTICS INC
  • US12545731B2 patent drawing
  • US12545731B2 patent drawing
  • US12545731B2 patent drawing

AI summary

Provided herein are single-chain polypeptides and multi-chain polypeptides that bind specifically to CD3 epsilon (CD3ε). Also provided herein are anti-idiotypic antibodies that bind specifically to any of the antigen-binding domains described herein.