Modulating Tumor Microenvironment Interactions via CD8 T Cell Gene Editing

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Solution Overview

Problem

Current cancer therapies face challenges in effectively targeting and modulating interactions within the tumor microenvironment to enhance anti-tumor immunity, as existing methods fail to adequately address the complex communication between various cell types and the extracellular matrix, leading to suppressed immune responses.

Innovation Solution

Modification of CD8 T cells to decrease or eliminate the expression and activity of specific proteins like NRP1 and CRTAM, and administration of antagonists targeting interactions such as VEGFB-NRP1, CADM1-CRTAM, and others, to enhance anti-tumor immune responses, combined with genetic modification using CRISPR or other systems to alter T cell function and expression profiles.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If existing cancer therapies are used, then treatment is provided, but they fail to adequately address complex cell communication in the tumor microenvironment, leading to suppressed immune responses

Engineering Contradiction:
Improveanti-tumor immune response effectivenessVSAvoidcomplexity of modulating cell interactions
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent extracts and removes specific proteins (NRP1, CRTAM) from T cells that mediate suppressive interactions in the tumor microenvironment. By deleting these specific genes, the therapy removes the harmful signaling pathways while preserving other T cell functions, thereby enhancing anti-tumor immunity without requiring complete redesign of the immune system.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent changes the molecular parameters of T cells by modifying gene expression levels of specific proteins. Through genetic deletion or modulation of NRP1 and CRTAM genes, the therapy alters the signaling capacity of T cells, transforming them from a state of suppressed function to an enhanced anti-tumor state.

Inventive Principle:
Principle #35Parameter changes

2Productivity

If T cell function is enhanced to overcome tumor resistance, then anti-tumor immunity improves, but the complex communication between cell types and extracellular matrix must be adequately addressed

Engineering Contradiction:
ImproveT cell function effectivenessVSAvoiddifficulty of assessing cell interaction modulation
Core Design Contradiction:
ProductivityVSDifficulty of detecting and measuring

Solution Approach 1:

The patent uses antagonists as intermediary molecules that block specific protein-protein interactions in the tumor microenvironment. These antagonists mediate the disruption of suppressive signaling pathways by preventing ligand-receptor binding, thereby enhancing T cell function without requiring direct manipulation of T cell genetics in all cases.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent segments the complex tumor microenvironment into specific interaction pathways (VEGFB-NRP1, CADM1-CRTAM, TFPI-SDC4, MFGE8-ITGAV, ADAM12-SDC4, CYR61-ITGAV, FN1-FBLN1/ITGB1) and targets each independently. This segmentation allows for precise modulation of specific suppressive pathways while leaving other immune functions intact.

Inventive Principle:
Principle #1Segmentation

Data Source

PatentUS11981922B2Methods and compositions for the modulation of cell interactions and signaling in the tumor microenvironment
Publication Date: 2024.05.14 DANA FARBER CANCER INSTITUTE INC
  • US11981922B2 patent drawing
  • US11981922B2 patent drawing
  • US11981922B2 patent drawing

AI summary

The present invention is generally directed to identify interacting cells in the tumor microenvironment and using the identified interactions to enhance anti-tumor immunity in cancer. Identified interactions can be modulated using therapeutic agents. Immune cells resistant to suppression can be used for adoptive cell transfer. The present invention is also generally directed to cell types and genes that are correlated to time of tumor growth and tumor size.