CFTR Modulator Synthesis via Coupling Agent

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Solution Overview

Problem

Current treatments for cystic fibrosis, particularly those targeting the ΔF508 mutation in the CFTR gene, face challenges in effectively modulating CFTR activity due to defective protein folding and trafficking, leading to reduced anion transport and severe disease symptoms.

Innovation Solution

The development of compounds synthesized through specific coupling reactions using carboxylic acids and anilines in the presence of coupling agents like 2-chloro-1,3-dimethyl-2-imidazolium tetrafluoroborate, which modulate CFTR activity by forming compounds that can be used to treat cystic fibrosis and other related diseases.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If small molecule drugs (potentiators) are developed to increase CFTR channel opening probability, then CFTR activity is improved, but the defective protein folding and trafficking in ΔF508 mutation cannot be effectively addressed

Engineering Contradiction:
ImproveCFTR channel opening probabilityVSAvoidProtein folding and trafficking
Core Design Contradiction:
ReliabilityVSManufacturing precision

Solution Approach 1:

The invention segments the CFTR modulation problem into two distinct components: (1) correctors that address protein folding and trafficking defects at the cellular level, and (2) potentiators that enhance channel opening probability at the membrane level. This segmentation allows simultaneous treatment of both the root cause (misfolding) and the symptomatic effect (reduced channel activity), resolving the contradiction between addressing folding defects and improving channel function.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention introduces corrector molecules as intermediary agents that mediate between the defective ΔF508-CFTR protein and the cellular quality control machinery. These correctors act as chaperones that facilitate proper protein folding and enable trafficking to the plasma membrane, thereby resolving the folding- trafficking defect that potentiators alone cannot address.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Reliability

If compounds are synthesized to modulate CFTR activity, then anion transport is improved, but the complexity of synthesizing and optimizing these compounds increases

Engineering Contradiction:
ImproveAnion transport functionVSAvoidCompound synthesis and optimization process
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The invention identifies universal structural features and pharmacophores that can serve as cores for both corrector and potentiator molecules. By establishing a library of core structures with defined substituent patterns, the invention enables systematic optimization of multiple compound classes using common synthetic frameworks, thereby reducing the overall complexity of compound synthesis and development while maintaining effectiveness in improving anion transport.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

These compounds enhance CFTR activity, potentially improving ion and fluid transport in epithelial tissues, thereby alleviating symptoms of cystic fibrosis and related conditions by increasing the stability and functionality of CFTR channels.

Implementation Method 1

coupling a carboxylic acid of Formula 2 with an aniline of Formula 3 in the presence of a coupling agent selected from the group consisting of 2-chloro-1,3-dimethyl-2-imidazolium tetrafluoroborate, HBTU, HCTU, 2-chloro-4,6-dimethoxy-1,3,5-triazine, HATU, HOBT/EDC, and T3P

Methodology Applied
Scientific EffectChemical Bonding: Chemical Bonding

Data Source

PatentEP3330255B1Process for making modulators of cystic fibrosis transmembrane conductance regulator
Publication Date: 2020.12.09 VERTEX PHARMACEUTICALS INC
  • EP3330255B1 patent drawing
  • EP3330255B1 patent drawing
  • EP3330255B1 patent drawing

AI summary

The invention provides a process for the preparation of a compound of Formula 1; comprising coupling a carboxylic acid of Formula 2; with an aniline of Formula 2; in the presence of a coupling agent.