Pharmacological Chaperones for Alpha-1-Antitrypsin Polymerization

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Solution Overview

Problem

Current therapies for alpha-1-antitrypsin deficiency, such as protein replacement therapy, are ineffective in addressing liver disease caused by the accumulation of polymerized Z-AT in hepatocytes and lack target specificity and minimal toxicity, necessitating a compound that can penetrate liver cells, bind to Z-AT, and inhibit its polymerization.

Innovation Solution

Pharmacological chaperones, including peptides and small molecules, selectively bind to alpha-1-antitrypsin, specifically at the A beta-sheet 4, to increase protein stability and trafficking, reducing ER accumulation and aggregation, thereby enhancing secretion and activity of alpha-1-antitrypsin.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If protein replacement therapy with M-AT is used, then lung pathology is treated effectively, but liver disease caused by Z-AT accumulation is not addressed

Engineering Contradiction:
Improveeffectiveness for lung pathologyVSAvoideffectiveness for liver disease
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

Pharmacological chaperones act as intermediary molecules that bind to Z-AT in the ER, facilitating its proper folding and secretion. This mediator approach allows the same compound to address both lung and liver pathology by enabling Z-AT to reach its functional destination in the blood while preventing toxic accumulation in the liver.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent describes compounds that simultaneously address multiple disease manifestations - they increase secretion of Z-AT to treat lung deficiency while preventing polymerization to treat liver toxicity. This multi-functional approach replaces the need for separate therapies for lung and liver disease.

Inventive Principle:
Principle #6Universality (Multi-functionality)

2Productivity

If osmolytes like 4-phenylbutyric acid are used to promote protein folding, then secretion of Z-AT is increased, but very high cellular concentrations are required and target specificity is lacking

Engineering Contradiction:
Improvesecretion of Z-ATVSAvoidcellular concentration required
Core Design Contradiction:
ProductivityVSQuantity of substance

Solution Approach 1:

The patent employs compounds with specific molecular parameters - small size (150-500 Da), particular functional groups, and optimized lipophilicity - that enable ER penetration and Z-AT binding at much lower concentrations than osmolytes. This parameter optimization allows effective therapy without requiring high cellular concentrations.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The compounds are designed to act locally within the ER by specifically binding to Z-AT and facilitating its folding and secretion. This localized action at the site of protein synthesis provides target specificity that systemic osmolytes lack, enabling effective concentrations to be achieved without affecting other cellular processes.

Inventive Principle:
Principle #3Local quality

3Object-generated harmful factors

If small peptides like Ac-TTAI-NH2 are used to block polymerization, then in vitro polymerization is blocked, but minimal toxicity and side effects with in vivo penetration capability are not achieved

Engineering Contradiction:
Improvepolymerization of Z-ATVSAvoidin vivo penetration and toxicity profile
Core Design Contradiction:
Object-generated harmful factorsVSEase of operation

Solution Approach 1:

The patent employs small molecule compounds rather than large peptides, creating more stable, orally bioavailable agents that can be administered systemically. These small molecules provide sustained polymerization inhibition without the rapid degradation and poor bioavailability issues of peptide-based approaches.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Solution Approach 2:

The compounds are optimized with specific molecular weight (150-500 Da), functional groups, and structural features that enable cell membrane penetration and ER entry while maintaining polymerization inhibition activity. This parameter optimization provides in vivo efficacy with minimal toxicity, overcoming the limitations of peptide-based approaches.

Inventive Principle:
Principle #35Parameter changes

4Reliability

If liver transplantation is performed for early-onset liver disease, then liver disease is treated, but it is not a sustainable long-term solution and does not address underlying Z-AT accumulation mechanism

Engineering Contradiction:
Improvetreatment of liver diseaseVSAvoidlong-term sustainability
Core Design Contradiction:
ReliabilityVSDuration of action of stationary object

Solution Approach 1:

The pharmacological chaperones enable the patient's own liver cells to properly fold, secrete, and manage Z-AT without requiring transplantation. This self-service approach restores the natural protein handling mechanism, providing a sustainable long-term solution that addresses the underlying molecular defect rather than replacing the organ.

Inventive Principle:
Principle #25Self-service

Solution Approach 2:

The compounds prevent Z-AT polymerization and enable proper secretion before toxic accumulation occurs, preventing disease progression and potentially avoiding the need for transplantation. This preliminary protective action addresses the root cause and provides long-term disease modification rather than temporary symptom management.

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The administration of these chaperones increases plasma levels and cellular activity of alpha-1-antitrypsin, reduces liver and lung damage by inhibiting polymerization and ER retention, effectively treating and preventing both lung and liver disorders associated with alpha-1-antitrypsin deficiency.

Implementation Method 1

Pharmacological chaperones, including peptides and small molecules, selectively bind to alpha-1-antitrypsin, specifically at the A beta-sheet 4, to increase protein stability and trafficking, reducing ER accumulation and aggregation

Methodology Applied
Scientific EffectProtein folding:

Implementation Method 2

The compounds bind to a site on alpha-1-antitrypsin, specifically, the A beta-sheet 4, and thereby abolish polymerization of alpha-1-antitrypsin. The compounds increase protein stability and trafficking, reducing ER accumulation and aggregation

Methodology Applied
Scientific EffectProtein trafficking:

Implementation Method 3

Desirably, to effect protein folding and secretion in vivo, a compound must be able to penetrate the ER of liver cells, have a high affinity for Z-AT, and block polymerization thereof with minimal toxicity and side effects

Methodology Applied
Scientific EffectPolymerization inhibition:

Data Source

PatentUS9867862B2Compounds and method for treating or preventing disease conditions associated with alpha-1-antitrypsin
Publication Date: 2018.01.16 AMICUS THERAPEUTICS INC
  • US9867862B2 patent drawing
  • US9867862B2 patent drawing
  • US9867862B2 patent drawing

AI summary

The present invention provides compounds and methods for the treatment of an individual having or at risk of having a condition associated with alpha-1-antitrypsin by using a pharmacological chaperone. In particular, such methods are useful for the treatment and/or prevention of lung disorders associated with alpha-1-antitrypsin deficiency as well as liver disorders associated with an excess of alpha-1-antitrypsin. Suitable pharmacological chaperones include peptides and low-molecular weight compounds. The present invention also provides an assay for determining whether a test compound modulates alpha-1-antitrypsin activity.