Charge-Protected Pro-Oligos for Efficient RNAi Delivery

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Solution Overview

Problem

Current methods for delivering biomolecules, particularly negatively charged molecules like polynucleotides, face challenges such as limited cell infectivity, immune responses, cytotoxicity, and inefficiency in large-scale production, especially with viral-based and cationic liposome systems.

Innovation Solution

Development of compounds acting as protecting groups that reversibly mask the negative charge of biomolecules, enhancing their lipophilicity and facilitating delivery across cell membranes by being biolabile and linked via covalent or non-covalent bonds, allowing for intracellular release.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If cationic liposomes are used for delivery, then delivery efficiency is improved, but cytotoxicity increases

Engineering Contradiction:
Improvedelivery efficiencyVSAvoidcytotoxicity
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent modifies the charge parameter of the delivery system by using neutral or anionic liposomes instead of cationic liposomes, thereby reducing cytotoxicity while maintaining delivery efficiency through alternative mechanisms such as targeted ligand attachment and endosomal escape pathways

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent introduces targeting ligands (antibodies, peptides, or other recognition molecules) as intermediaries that mediate the interaction between the liposome and target cells, enabling specific delivery without relying on electrostatic attraction, thus reducing cytotoxicity while improving delivery efficiency

Inventive Principle:
Principle #24Intermediary (Mediator)

2Productivity

If viral-based delivery systems are used, then delivery efficiency is improved, but immune responses and production difficulty increase

Engineering Contradiction:
Improvedelivery efficiencyVSAvoidproduction complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent employs non-viral liposomal vectors that are simpler to produce and dispose of, replacing complex viral vectors with readily manufacturable lipid-based systems that achieve comparable delivery efficiency through chemical rather than biological mechanisms

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Solution Approach 2:

The patent creates composite liposomal structures combining lipids with targeting ligands, protective coatings, and therapeutic payloads, achieving viral-level delivery efficiency through carefully engineered material compositions without the complexities of viral assembly

Inventive Principle:
Principle #40Composite materials

3Reliability

If negatively charged biomolecules are delivered, then therapeutic effect is improved, but cell membrane penetration becomes difficult

Engineering Contradiction:
Improvetherapeutic effectVSAvoidmembrane penetration
Core Design Contradiction:
ReliabilityVSEase of operation

Solution Approach 1:

The patent uses liposomal membranes and targeting ligands as intermediaries that facilitate the passage of negatively charged biomolecules across the cell membrane through endocytosis and endosomal escape mechanisms, overcoming the electrostatic repulsion barrier

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent modifies the delivery system's charge parameters by using neutral or anionic liposomes that can approach and interact with cell membranes without electrostatic repulsion, then utilize pH-dependent or other environmental triggers to release the negatively charged therapeutic payload inside the cell

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The solution enables efficient and reduced cytotoxic delivery of biomolecules, achieving high knockdown efficacy and stability with minimal reversal toxicity, as demonstrated by significant reduction in gene expression in cellular models.

Implementation Method 1

compounds acting as protecting groups that reversibly mask the negative charge of biomolecules, enhancing their lipophilicity

Methodology Applied
Scientific EffectCharge masking:

Implementation Method 2

enhancing their lipophilicity and facilitating delivery across cell membranes

Methodology Applied
Scientific EffectLipophilicity enhancement:

Implementation Method 3

linked via covalent or non-covalent bonds, allowing for intracellular release

Methodology Applied
Scientific EffectBiolabile cleavage: Hydrolysis

Data Source

PatentUS8691971B2Self delivering bio-labile phosphate protected pro-oligos for oligonucleotide based therapeutics and mediating RNA interference
Publication Date: 2014.04.08 PETERSEN SCOTT
  • US8691971B2 patent drawing
  • US8691971B2 patent drawing
  • US8691971B2 patent drawing

AI summary

Disclosed herein are compositions and methods for generating ribo-nucleic neutral (RNN) or deoxyribo-nucleic-neutral (DNN) polynucleotides with reduced anionic charge, for improved intracellular delivery. Also disclosed herein are methods of using RNN and DNN compositions.