Dual-Domain Chimeric Proteins for Autoimmune Immune Modulation

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Solution Overview

Problem

Current treatments for autoimmune diseases like inflammatory bowel disease and irritable bowel syndrome are inadequate, lacking effective therapies that minimize infection risk while modulating immune responses.

Innovation Solution

Development of chimeric proteins comprising two domains that bind to specific ligands/receptors, activating immune inhibitory signals or inhibiting immune activating signals, thereby reducing self-directed immune system activity.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If current treatments for autoimmune diseases are used, then immune response is modulated, but infection risk increases

Engineering Contradiction:
Improveeffectiveness of immune modulationVSAvoidinfection risk
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The chimeric protein is divided into two distinct functional domains: a first domain that binds to an activating ligand/receptor to inhibit immune activation, and a second domain that binds to an inhibitory ligand/receptor to enhance immune suppression. This segmentation allows each domain to independently perform its specific function, achieving effective immune modulation while controlling infection risk through balanced dual-action mechanisms.

Inventive Principle:
Principle #1Segmentation

2Reliability

If chimeric proteins with dual domains are developed, then immune modulation effectiveness improves, but protein structure complexity increases

Engineering Contradiction:
Improveimmune modulation effectivenessVSAvoidprotein structure complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

Two separate functional domains are merged into a single chimeric protein molecule through a linker sequence. The first domain (inhibiting immune activation) and the second domain (enhancing immune suppression) are covalently connected, allowing the protein to exert dual immunomodulatory effects simultaneously. This merging approach maintains structural integrity while achieving coordinated immune regulation.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The chimeric protein is designed with multi-functionality, where a single molecule performs multiple immunomodulatory functions: blocking activating ligand-receptor interactions, enhancing inhibitory ligand-receptor interactions, and regulating immune responses through multiple pathways. This universal design improves therapeutic effectiveness while reducing the need for multiple separate agents.

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Ease of operation

If single-domain immunotherapies are used, then treatment is simple, but efficacy in non-responsive or resistant patients is insufficient

Engineering Contradiction:
Improvetreatment simplicityVSAvoidefficacy in non-responsive or resistant patients
Core Design Contradiction:
Ease of operationVSReliability

Solution Approach 1:

The chimeric protein provides dynamic immune regulation by simultaneously engaging both activating and inhibitory ligand-receptor pathways. This dynamic dual-action mechanism allows the therapy to adapt to varying immune states, making it effective for non-responsive or resistant patients who may not respond to static single-domain therapies. The balanced inhibition and enhancement create a more resilient therapeutic effect.

Inventive Principle:
Principle #15Dynamics

Data Source

PatentUS20250345406A1Chimeric proteins in autoimmunity
Publication Date: 2025.11.13 SHATTUCK LABS INC
  • US20250345406A1 patent drawing
  • US20250345406A1 patent drawing
  • US20250345406A1 patent drawing

AI summary

The present disclosure relates, inter alia, to compositions and methods, including chimeric proteins, and nucleic acids encoding the chimeric proteins having a first domain comprising an extracellular domain of a first transmembrane protein, a first secreted protein, or a first membrane-anchored extracellular protein and a second domain comprising an extracellular domain of a second transmembrane protein, a second secreted protein, or a second membrane-anchored extracellular protein, in which either or both of the first domain and the second domain decreases self-directed immune system activity when bound to its ligand/receptor. Accordingly, the present disclosure find use in the treatment of autoimmune diseases, and particularly, inflammatory bowel diseases.