Cleavable Affinity Compounds for Uniform Antibody–Drug Conjugation

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Solution Overview

Problem

Existing antibody-drug conjugates (ADCs) face issues with nonuniform drug-antibody ratios (DAR) and unpredictable drug binding positions, leading to variations in pharmacokinetics and efficacy, which current genetic engineering and chemical modification methods struggle to address effectively.

Innovation Solution

A novel compound with an affinity substance, a cleavable portion, and a reactive group, allowing for regioselective modification of antibodies without using peptide linkers, utilizing a polypeptide with a glutamine residue at the N-terminal to specifically bind to antibodies, enabling controlled drug conjugation.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If random conjugation method is used to attach drug to antibody, then productivity is improved (simple process), but manufacturing precision deteriorates (nonuniform DAR and conjugation position)

Engineering Contradiction:
Improveconjugation process efficiencyVSAvoiddrug-antibody ratio uniformity
Core Design Contradiction:
ProductivityVSManufacturing precision

Solution Approach 1:

The invention introduces a peptide tag with specific local properties (affinity for antibody Fc region) at a defined position, creating a localized modification site that ensures uniform DAR while maintaining efficient conjugation. The peptide tag serves as a predetermined anchor point that guides drug attachment to specific locations on the antibody.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The peptide tag is预先 attached to the antibody at a specific location before drug conjugation. This preliminary action creates a predetermined modification site that controls subsequent drug attachment, ensuring uniform DAR and consistent conjugation position while simplifying the overall process.

Inventive Principle:
Principle #10Preliminary action

2Manufacturing precision

If genetic engineering modification method is used to achieve regioselective modification, then manufacturing precision is improved (controlled conjugation position), but device complexity deteriorates (complex expression system construction)

Engineering Contradiction:
Improveconjugation position controlVSAvoidexpression system construction complexity
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The invention introduces a peptide tag as an intermediary element that mediates between the antibody and the drug conjugation process. This peptide tag provides a controlled attachment site without requiring complex genetic engineering of the antibody itself, simplifying the overall system while achieving precise regioselective modification.

Inventive Principle:
Principle #24Intermediary (Mediator)

3Ease of manufacture

If peptide linker is used in antibody-drug conjugate, then ease of manufacture is improved (chemical synthesis), but reliability deteriorates (immunogenicity and hydrolysis)

Engineering Contradiction:
Improvechemical synthesis feasibilityVSAvoidconjugate stability
Core Design Contradiction:
Ease of manufactureVSReliability

Solution Approach 1:

The invention changes the chemical parameters of the linker by using a peptide tag with specific amino acid composition and structure. This peptide tag is designed to be resistant to hydrolysis and has reduced immunogenicity while maintaining chemical synthesis feasibility, thus improving reliability without sacrificing ease of manufacture.

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Achieves regioselective modification of antibodies with high yield and specificity, avoiding immunogenicity and hydrolysis issues, facilitating the development of consistent and effective ADCs.

Implementation Method 1

a compound having an affinity substance (A) to an antibody

Methodology Applied
Scientific EffectAffinity binding: Adsorption

Implementation Method 2

a reactive group (R) to an amino acid residue in the antibody

Methodology Applied
Scientific EffectChemical bonding: Chemical Bonding

Implementation Method 3

a cleavable portion (L) between the affinity substance and the reactive group

Methodology Applied
Scientific EffectCleavage: Decomposition (biological)

Data Source

PatentUS12428450B2Compound having affinity substance to antibody, cleavable portion, and reactive group, or salt thereof
Publication Date: 2025.09.30 AJINOMOTO CO INC
  • US12428450B2 patent drawing
  • US12428450B2 patent drawing
  • US12428450B2 patent drawing

AI summary

Compounds having an affinity substance to an antibody, a cleavable portion, and a reactive group, or a salt thereof, are represented by the following Formula (I):A-L-B—R  (I)whereinA is an affinity substance to an antibody,L is a cleavable linker that is a divalent group comprising a cleavable portion,B is (a) a divalent group comprising a bioorthogonal functional group or (b) a divalent group comprising no bioorthogonal functional group, andR is a reactive group to the antibody,wherein the affinity substance to an antibody is a polypeptide comprising a glutamine residue (Q) at an N-terminal.