Click Nucleic Acid Polymers for Trinucleotide Repeat Disorders

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Solution Overview

Problem

Current therapies for trinucleotide repeat disorders, such as Huntington's Disease, are inadequate, and conventional small-molecule drugs are ineffective in targeting intrinsic genetic diseases, while existing antisense oligonucleotide synthesis methods are resource-intensive and inefficient for preparing targeted therapies.

Innovation Solution

Development of Click Nucleic Acid (CNA) polymers using thiol-Michael and thiol-ene reactions to facilitate the assembly of oligomers and polymers with repeating sequences, allowing for the synthesis of CNA-polymers of varying lengths for targeted treatment of trinucleotide repeat disorders.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If conventional small-molecule drugs are used to treat genetic diseases, then the treatment approach is simple, but the drugs are ineffective in targeting intrinsic genetic diseases

Engineering Contradiction:
Improveeffectiveness of treatmentVSAvoidcomplexity of therapeutic approach
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent uses antisense oligonucleotides as intermediary molecules that bind to specific mRNA sequences through complementary base pairing, preventing translation of mutant proteins. This intermediary approach allows small molecules to indirectly target genetic diseases by modulating gene expression rather than directly interacting with genetic material

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The invention employs composite oligonucleotide structures combining different nucleotide analogs (e.g., phosphorothioate backbone with modified bases) to enhance stability, specificity, and cellular uptake while maintaining the ability to target genetic sequences

Inventive Principle:
Principle #40Composite materials

2Reliability

If conventional antisense oligonucleotide synthesis methods are used, then targeted therapy can be achieved, but the synthesis process is resource-intensive and inefficient

Engineering Contradiction:
Improvetargeted therapy capabilityVSAvoidsynthesis efficiency
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent divides the synthesis process into modular stages using repeating oligonucleotide units (e.g., 6-12 mer segments) that can be synthesized independently and then assembled through ligation. This segmentation allows parallel synthesis of multiple units and reduces the resource burden of synthesizing long sequences in a single step

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention performs preliminary synthesis of standardized oligonucleotide building blocks with pre-installed functional groups (e.g., phosphoramidite groups, ligation sites) that can be rapidly assembled. This preliminary preparation of modular units accelerates the overall synthesis process and reduces resource requirements during final assembly

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The CNA-polymers provide a facile and controlled process for preparing antisense polymers that can effectively target and treat trinucleotide repeat disorders, offering a promising therapeutic approach with potential for treating conditions like Huntington's Disease and other genetic disorders.

Implementation Method 1

The thiol group can undergo a Michael addition to the vinyl group to form a dimer

Methodology Applied
Scientific EffectMichael addition: Chemical Bonding

Implementation Method 2

The thiol group can undergo a thiol-ene reaction with the vinyl group to form oligomers and polymers

Methodology Applied
Scientific EffectThiol-ene reaction: Chemical Bonding

Data Source

PatentUS10508116B2Click nucleic acid polymers and methods of use
Publication Date: 2019.12.17 THE REGENTS OF THE UNIVERSITY OF COLORADO
  • US10508116B2 patent drawing
  • US10508116B2 patent drawing
  • US10508116B2 patent drawing

AI summary

Disclosed herein are Click Nucleic Acid Polymers (CNA-polymers) that comprise repeating dimer, trimer and tetramer units. The disclosed polymers can be used for antisense applications, for example, in treatment of “trinucleotide repeat disorders, i.e., Huntington's Disease and the like.