Clonal Seed Production via RNA Methylation Defects

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Solution Overview

Problem

Current agricultural practices require repeated purchase of seeds for desirable traits as hybrid seeds lose agronomic value due to natural sexuality, leading to increased costs and loss of desirable characteristics over generations, while apomictic plants can maintain these traits through clonal reproduction.

Innovation Solution

Methods for obtaining clonal seeds by using maternal plants defective in RNA-dependent DNA methylation pathway genes, which are unable to be pollinated, and subsequent sorting of seeds to separate clonal from non-clonal seeds, potentially using gametocides or emasculation to enhance seed production.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If hybrid seeds are used for cultivation, then desirable agronomic traits are improved in the first generation, but the traits are lost in subsequent generations due to natural sexuality and separation of genetic traits

Engineering Contradiction:
Improvemaintenance of desirable traitsVSAvoidseed replacement cycle
Core Design Contradiction:
ReliabilityVSLoss of time

Solution Approach 1:

The invention segments the seed population into two distinct groups: apomictic seeds that clone the hybrid genotype and maintain desirable traits indefinitely, and sexual seeds that follow normal Mendelian inheritance. This segmentation allows farmers to selectively save and replant only the apomictic seeds, breaking the annual seed replacement cycle while maintaining trait reliability.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention changes the fundamental parameter of seed reproduction from sexual (meiotic) to asexual (mitotic) by inducing apomixis. This parameter change transforms the seed production process, enabling the hybrid genotype to be cloned and propagated true-to-type across multiple generations, thereby eliminating the need for annual hybrid seed purchases.

Inventive Principle:
Principle #35Parameter changes

2Reliability

If vegetative reproduction techniques are used to preserve plant traits, then genetic fidelity is maintained, but cultivation costs increase significantly

Engineering Contradiction:
Improvegenetic fidelityVSAvoidcultivation cost
Core Design Contradiction:
ReliabilityVSEase of manufacture

Solution Approach 1:

The invention uses apomixis as a natural copying mechanism that produces clonal seeds identical to the parent plant's genotype. This copying process occurs through the plant's natural seed production system rather than requiring artificial vegetative propagation techniques, thereby maintaining genetic fidelity while avoiding the high costs associated with tissue culture, grafting, or other specialized vegetative reproduction methods.

Inventive Principle:
Principle #26Copying

Solution Approach 2:

The apomictic plants perform self-service by producing clonal seeds through their own natural reproductive system. This eliminates the need for external intervention, specialized equipment, or labor-intensive procedures required by vegetative reproduction methods, thereby dramatically reducing cultivation costs while maintaining genetic fidelity.

Inventive Principle:
Principle #25Self-service

3Reliability

If apomixis is induced in cultivated plants, then clonal seed production and trait preservation are achieved, but the complexity of seed production processes increases

Engineering Contradiction:
Improveclonal trait preservationVSAvoidseed production process
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The invention introduces dynamics into the seed production process by allowing plants to switch between sexual and apomictic reproduction modes. This dynamic capability enables the same plant population to produce both conventional sexual seeds and clonal apomictic seeds, providing flexibility in seed production strategies without requiring entirely separate production systems.

Inventive Principle:
Principle #15Dynamics

Solution Approach 2:

The invention uses chemical agents or genetic modifiers as intermediaries to induce apomixis in cultivated plants. These intermediaries temporarily alter the reproductive pathway to produce apomictic seeds, which can then be selected and propagated. This intermediary approach allows induction of apomixis without permanently altering the plant's genetic makeup, thereby managing process complexity while achieving clonal preservation.

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables the production of clonal seeds that maintain the genetic traits of the maternal plant, allowing for recurrent sowing and preservation of high-performing plant varieties, reducing the need for continuous seed purchases and promoting sustainable agricultural practices.

Implementation Method 1

maternal plants defective in RNA-dependent DNA methylation pathway genes

Methodology Applied
Scientific EffectRNA-dependent DNA methylation:

Data Source

PatentUS20230132042A1Methods for Reproducing Plants Asexually and Compositions Thereof
Publication Date: 2023.04.27 PIONEER HI BREED INTERNATIONAL INC
  • US20230132042A1 patent drawing
  • US20230132042A1 patent drawing
  • US20230132042A1 patent drawing

AI summary

Disclosed are methods of obtaining clonal seeds, methods of plant cloning, methods of screening for maternal plants that produce clonal seeds asexually and methods of increasing yield of clonal seeds. Also disclosed are constructs comprising a nucleic acid that may silence the activity of a RNA-dependent DNA methylation pathway gene. Further disclosed are maternal plants comprising a construct wherein the construct comprises an exogenous nucleic acid sequence, wherein the construct renders the maternal plant defective for RNA-dependent DNA methylation.