Complex System Intervention Modeling for Target-State Perturbation

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Solution Overview

Problem

Current network analysis methods for complex systems, such as protein structure networks, are limited in determining the perturbations required to transition from an initial state to a target state with minimal error, as they primarily focus on perturbing specific network points and examining the effects of therapeutic agents without identifying the necessary perturbations to reach or approximate the target state.

Innovation Solution

A computer-implemented method that models complex systems as networks, where objects are represented by points and relations by edges, uses test excitations to simulate behavior, iteratively adjusts these excitations using algorithms like genetic algorithms or simulated annealing to find the optimal set that transfers the network from an initial to a target state, minimizing the number of network points involved.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If perturbation is carried out only in certain network points to examine therapeutic agent effects, then the analysis focuses on specific target interactions, but the method cannot determine through which perturbations a target state can be reached from an initial state

Engineering Contradiction:
Improveprecision in identifying therapeutic agent targetsVSAvoidability to determine perturbations for reaching target state
Core Design Contradiction:
Measurement precisionVSAdaptability or versatility

Solution Approach 1:

Instead of starting from the initial state and examining where perturbations lead, the invention inverts the approach by specifying a target state first and then determining which perturbations of the initial state can reach this target. This inversion transforms the problem from exploratory analysis to directed intervention design, enabling the identification of specific perturbations needed to achieve desired system states.

Inventive Principle:
Principle #13The other way round (Inversion)

Solution Approach 2:

The invention employs feedback mechanisms by comparing the simulated network state after perturbation with the desired target state. Through iterative optimization algorithms, the system receives feedback on whether the perturbation successfully reached the target state and adjusts subsequent perturbation selections accordingly, enabling systematic determination of effective interventions.

Inventive Principle:
Principle #23Feedback

2Reliability

If multiple network points are perturbed to reach a target state, then the system can achieve the desired state, but the number of network points and complexity of intervention increases

Engineering Contradiction:
Improveability to reach target stateVSAvoidnumber of network points involved in intervention
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The invention applies partial action by selecting only the necessary subset of network points for perturbation rather than perturbing all possible points. The optimization algorithms identify the minimal set of perturbations required to reach the target state, avoiding unnecessary interventions and reducing system complexity while maintaining effectiveness.

Inventive Principle:
Principle #16Partial or excessive action

Solution Approach 2:

The invention changes parameters by optimizing the selection criteria for network points to be perturbed. Through iterative algorithms, the system adjusts which network points are selected for perturbation based on their contribution to reaching the target state, thereby minimizing the number of points involved while ensuring reliable state transition.

Inventive Principle:
Principle #35Parameter changes

Data Source

PatentUS11960802B2Method, processor device and computer program product for designing intervention into the behaviour of a real complex system
Publication Date: 2024.04.16 TURBINE SIMULATED CELL TECH LTD
  • US11960802B2 patent drawing
  • US11960802B2 patent drawing
  • US11960802B2 patent drawing

AI summary

A computer-implemented method for designing intervention into the behavior of a real complex system of technical or biochemical nature. The real complex system is modeled by a network of objects and relations between the objects. The objects of the system are represented by network points and the relations are represented by edges between the network points. The states of the objects are described by a parameter set and the relations associated with the edges are described by functions of time.