Confocal Microscope Autofluorescence and Reflected Light Data Association

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Solution Overview

Problem

Existing methods for identifying and analyzing microorganisms lack the ability to non-invasively acquire spatial positional information in three-dimensional space, and do not effectively record autofluorescence and reflected light in association with each other on a single set of coordinates.

Innovation Solution

A data creation method that uses a confocal laser scanning microscope to irradiate a specimen with laser light, obtaining autofluorescence and reflected light, and generating data that associates the intensity of this light with spatial coordinates, allowing for non-invasive analysis and identification of microorganisms.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If conventional metagenomic analysis or colony autofluorescence methods are used to identify microorganisms, then species identification can be achieved, but spatial positional information in three-dimensional space cannot be acquired

Engineering Contradiction:
Improvespatial positional informationVSAvoidspatial coordinates
Core Design Contradiction:
Measurement precisionVSLoss of information

Solution Approach 1:

The patent combines multiple types of light detection (autofluorescence and reflected light) into a single integrated system that captures both signals simultaneously with their spatial coordinates, merging previously separate identification and imaging functions into one comprehensive measurement approach

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The invention transitions from conventional two-dimensional imaging to three-dimensional spatial mapping by utilizing the confocal microscope's depth scanning capability to acquire autofluorescence and reflected light signals at multiple focal planes, thereby reconstructing three-dimensional positional information

Inventive Principle:
Principle #17Another dimension (Dimensionality change)

2Adaptability or versatility

If autofluorescence and reflected light are recorded separately, then each signal can be analyzed independently, but they cannot be associated with each other on one set of coordinates

Engineering Contradiction:
Improvesignal analysis flexibilityVSAvoidcoordinate association
Core Design Contradiction:
Adaptability or versatilityVSLoss of information

Solution Approach 1:

The system uses the detected reflected light signal as feedback to identify and extract corresponding autofluorescence signals from the same spatial location, creating a coordinated relationship between the two signal types through iterative detection and matching processes

Inventive Principle:
Principle #23Feedback

Solution Approach 2:

The patent creates a universal data structure that can accommodate both autofluorescence and reflected light signals within the same coordinate system, enabling the system to handle multiple signal types simultaneously while maintaining their spatial relationships for versatile analysis

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Measurement precision

If confocal microscope is used to observe microorganism dynamics in three-dimensional space, then positional and movement information can be grasped, but non-invasive identification based on autofluorescence at single-cell resolution has not been reported

Engineering Contradiction:
Improvesingle-cell resolutionVSAvoididentification accuracy
Core Design Contradiction:
Measurement precisionVSReliability

Solution Approach 1:

The system performs preliminary scanning to detect reflected light signals that indicate the presence and position of microorganisms, then uses this preliminary information to guide subsequent autofluorescence detection at the same locations, ensuring accurate single-cell identification

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The reflected light signal serves as an intermediary that bridges the gap between physical presence detection and biochemical identification, allowing the system to locate microorganisms and then identify them through their autofluorescence characteristics without direct contact or intervention

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables non-invasive analysis and identification of microorganisms by acquiring spatial positional information in three-dimensional space, effectively utilizing autofluorescence and reflected light data to distinguish between different species of microorganisms.

Implementation Method 1

irradiating a specimen with laser light, obtaining autofluorescence and reflected light

Methodology Applied
Scientific EffectAutofluorescence: Fluorescence

Implementation Method 2

irradiating a specimen with laser light, obtaining autofluorescence and reflected light

Methodology Applied
Scientific EffectReflection: Reflection

Data Source

PatentEP3561490B1Data creation method and data use method
Publication Date: 2025.06.18 UNIV OF TSUKUBA
  • EP3561490B1 patent drawingFigure 1
  • EP3561490B1 patent drawingFigure 2
  • EP3561490B1 patent drawingFigure 3~4

AI summary

A data creation method includes: an autofluorescence data generation step of placing a focus of light having a predetermined wavelength at one set of coordinates on a predetermined focal plane, irradiating a sample positioned at the set of coordinates with excitation light containing the light to obtain autofluorescence emitted from the sample, and generating autofluorescence data including intensity data and/or spectrum data of the autofluorescence; a reflected light data generation step of irradiating the set of coordinates on the predetermined focal plane with illumination light to obtain reflected light scattered by the sample, and generating intensity data of the reflected light; and a correspondence data creation step of creating correspondence data associating the autofluorescence data and the reflected light data on the set of coordinates on the predetermined focal plane.