Covalent USP7 Inhibitor Scaffolds for Potency and Selectivity

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Solution Overview

Problem

Current USP7 inhibitors exhibit modest potency and poor selectivity, solubility, and toxicity, limiting their effectiveness in targeting USP7 for therapeutic applications.

Innovation Solution

Development of small molecule USP7 inhibitors that covalently bind to USP7, featuring specific structural formulas with varying substituents and linkages, enhancing potency and selectivity.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If known USP7 inhibitors are used, then USP7 inhibition is achieved, but potency is modest and selectivity is poor

Engineering Contradiction:
Improvepotency and selectivityVSAvoidtoxicity and poor solubility
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent applies parameter changes by modifying the chemical structure of USP7 inhibitors through varying substituents (R1-R4, Ring B) and linkages (L1, L3) to optimize potency and selectivity while reducing toxicity and improving solubility

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent employs local quality by introducing specific functional groups and substituents at particular positions in the inhibitor structure to enhance binding affinity for USP7 while maintaining selectivity against other DUBs

Inventive Principle:
Principle #3Local quality

2Adaptability or versatility

If polypharmacological DUB inhibitors are used, then broad DUB family coverage is achieved, but potency toward primary target is weak

Engineering Contradiction:
Improvebroad DUB coverageVSAvoidpotency
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The patent uses local quality by designing inhibitors with specific structural features that target USP7's unique active site characteristics, achieving high potency and selectivity for USP7 while maintaining the ability to inhibit other DUBs

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent applies universality by creating a inhibitor scaffold that can interact with multiple DUB family members while maintaining optimized potency for USP7 through specific substituent variations

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The developed inhibitors demonstrate improved potency and selectivity against USP7, providing potential therapeutic benefits for treating diseases modulated by USP7, including cancer.

Implementation Method 1

small molecule USP7 inhibitors that covalently bind to USP7

Methodology Applied
Scientific EffectCovalent bonding: Chemical Bonding

Data Source

PatentUS12503453B2USP7 inhibition
Publication Date: 2025.12.23 DANA FARBER CANCER INSTITUTE INC
  • US12503453B2 patent drawing
  • US12503453B2 patent drawing
  • US12503453B2 patent drawing

AI summary

Disclosed herein are inhibitors of deubiquitinating (DUB) enzyme USP7 (Ubiquitin Specific Protease 7). Also provided are methods of treating a disease or disorder modulated by USP7.