DARPin CD33 Engagers Reduce AML Toxicity

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Solution Overview

Problem

Current therapies for acute myeloid leukemia (AML) face challenges such as high mortality rates, treatment resistance, severe side effects, and on-target/off-tumor toxicities due to high affinity of antibody-based treatments for CD33, leading to a need for new CD33-specific binding proteins with improved toxicity profiles and therapeutic windows.

Innovation Solution

Development of recombinant binding proteins with ankyrin repeat domains that specifically target human CD33, which can be combined with other functional moieties like binding moieties for immune cells, half-life extending agents, or cytotoxic agents to enhance therapeutic efficacy while minimizing side effects.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If antibody-based treatments with high affinity for CD33 are used, then therapeutic efficacy against AML cells is improved, but on-target/off-tumor toxicity and severe side effects occur

Engineering Contradiction:
Improvetherapeutic efficacyVSAvoidon-target/off-tumor toxicity
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent changes the molecular structure parameter from conventional antibodies to ankyrin repeat domain proteins (DARPins), which provides high affinity and specificity for CD33 while reducing off-target effects and toxicity associated with traditional antibody-based therapies

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The DARPin proteins are engineered with specific local binding regions that target CD33 with high precision on AML cells, while the overall protein structure maintains properties that reduce systemic toxicity and off-tumor effects compared to full-length antibodies

Inventive Principle:
Principle #3Local quality

2Reliability

If gemtuzumab ozogamicin (anti-CD33 monoclonal antibody conjugated to calicheamicin) is used, then cytotoxic activity against AML cells is improved, but hematologic and hepatic toxicity increases

Engineering Contradiction:
Improvecytotoxic activityVSAvoidhematologic and hepatic toxicity
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent extracts the essential binding function from conventional monoclonal antibodies and implements it using smaller ankyrin repeat domain proteins, which can be conjugated to cytotoxic agents with improved pharmacokinetic properties and reduced toxicity profiles

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The DARPin proteins have smaller molecular weight and different metabolic pathways compared to full-length antibodies, leading to altered clearance rates and reduced accumulation in toxic organs, effectively creating a shorter-lived therapeutic agent with reduced long-term toxicity

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

3Reliability

If CAR-T cell therapy targeting CD33 is used, then T cell cytotoxicity against AML cells is improved, but cytokine release syndrome and broad side effects on non-AML cells occur

Engineering Contradiction:
ImproveT cell cytotoxicityVSAvoidcytokine release syndrome
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent uses DARPin proteins as intermediary binding agents that can engage CD33 on AML cells and recruit immune cells or deliver cytotoxic payloads more selectively, avoiding the systemic immune activation and cytokine release syndrome associated with CAR-T cell therapy

Inventive Principle:
Principle #24Intermediary (Mediator)

4Reliability

If T cell engager bispecific antibodies are used, then functional connection between T cells and tumor cells is improved, but production costs increase and severe side effects occur

Engineering Contradiction:
ImproveT cell activationVSAvoidproduction complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent segments the complex bispecific antibody structure into smaller modular DARPin protein components, each with specific binding functions, which simplifies production while maintaining the ability to engage both T cells and CD33-expressing tumor cells

Inventive Principle:
Principle #1Segmentation

Data Source

PatentUS20240317852A1Novel darpin based CD33 engagers
Publication Date: 2024.09.26 MOLECULAR PARTNERS AG
  • US20240317852A1 patent drawing
  • US20240317852A1 patent drawing
  • US20240317852A1 patent drawing

AI summary

The present invention relates to recombinant binding proteins comprising an ankyrin repeat domain, wherein the ankyrin repeat domain has binding specificity for human CD33, in addition, the invention relates to nucleic acids encoding such recombinant binding proteins, pharmaceutical compositions comprising such proteins or nucleic acids, and the use of such binding proteins, nucleic acids or pharmaceutical compositions in methods for treating or diagnosing diseases, such as cancer, e.g., acute myeloid leukemia (AML), in mammal, including a human.