DNA Scaffolded Chromophore Quantum Gates

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Solution Overview

Problem

Chromophores exhibit non-ideal characteristics for quantum computing due to strong coupling with vibrational and environmental degrees of freedom, leading to phase jitter and phase errors, and are difficult to arrange in requisite configurations, limiting their effectiveness in quantum computations.

Innovation Solution

The use of chromophores attached to a nucleotide architecture allows for the self-assembly of complex structures with precise placement of chromophores, enabling exciton transfer without energy loss, and the creation of exciton wires and gates such as basis-change, phase-shift, and controlled basis-change gates for quantum computing.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Temperature

If chromophores are used for quantum computing, then quantum computations can be performed in noisy environments at room temperature, but chromophores exhibit strong coupling with vibrational and environmental degrees of freedom leading to phase jitter and phase errors

Engineering Contradiction:
Improveoperating temperatureVSAvoidphase stability
Core Design Contradiction:
TemperatureVSReliability

Solution Approach 1:

The patent introduces DNA scaffolds as intermediary structures that hold chromophores in precise geometric arrangements. The DNA scaffold acts as a mediator that isolates chromophores from environmental noise while maintaining their quantum coherence, enabling room-temperature operation with reduced phase errors through the protective and structuring role of the DNA framework

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent creates locally optimized chromophore environments by precisely positioning individual chromophores at specific locations on DNA scaffolds. Each chromophore experiences a controlled local environment with defined spacing and orientation, which minimizes unwanted interactions with vibrational modes and environmental degrees of freedom, thereby reducing phase jitter while maintaining room temperature operation

Inventive Principle:
Principle #3Local quality

2Loss of energy

If chromophores are arranged in requisite configurations for quantum computing, then exciton transfer without energy loss can be achieved, but chromophores are difficult to arrange in precise configurations

Engineering Contradiction:
Improveenergy loss in exciton transferVSAvoidease of chromophore arrangement
Core Design Contradiction:
Loss of energyVSEase of manufacture

Solution Approach 1:

The patent employs DNA self-assembly mechanisms where complementary DNA strands automatically find and bind to each other, precisely positioning chromophores in the required configurations. The chromophore-DNA conjugates self-assemble into ordered structures through Watson-Crick base pairing, eliminating the need for complex external assembly processes while achieving the precise nanometer-scale spacing required for efficient exciton transfer

Inventive Principle:
Principle #25Self-service

Solution Approach 2:

The DNA scaffold serves as an intermediary that simplifies chromophore arrangement. Instead of directly manipulating chromophores which is difficult, the patent uses DNA as a programmable template that automatically organizes chromophores into the requisite configurations through sequence-specific hybridization, making the arrangement process straightforward and reliable

Inventive Principle:
Principle #24Intermediary (Mediator)

3Loss of energy

If chromophores are spaced closely for exciton transfer, then energy transfer efficiency increases, but chromophores must be nanospaced which increases manufacturing difficulty

Engineering Contradiction:
Improveenergy loss in exciton transferVSAvoidspacing precision
Core Design Contradiction:
Loss of energyVSManufacturing precision

Solution Approach 1:

The DNA scaffold's fixed structural geometry automatically provides the precise nanometer-scale spacing required for efficient exciton transfer. The rigid DNA backbone and defined helical parameters ensure that chromophores attached to specific DNA positions are automatically spaced at the optimal distance (typically 2-10 nm), eliminating the need for manual precision spacing while maximizing energy transfer efficiency

Inventive Principle:
Principle #25Self-service

Solution Approach 2:

The patent controls the spacing parameter by selecting different DNA sequences and structures (e.g., different lengths of linker regions, different DNA secondary structures). By changing the DNA sequence parameters, the chromophore spacing can be precisely tuned to achieve optimal exciton transfer efficiency without requiring complex manufacturing processes

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach enables efficient quantum computing in noisy environments at room temperature, reducing the number of components required and enhancing computational speed through precise control of exciton propagation and interaction, facilitating tasks that benefit from quantum parallelism.

Implementation Method 1

When two molecules are very close to each other the energy of an excited chromophore can be transferred to a neighboring chromophore without energy loss

Methodology Applied
Scientific EffectExciton transfer:

Implementation Method 2

The Davydov splitting and the circular dichroism (CD) spectra seen in chromophore aggregates is a manifestation of this delocalization

Methodology Applied
Scientific EffectDavydov splitting:

Implementation Method 3

The optical transition frequency here denotes the energy difference between the chromophore's ground electronic state and its lowest excited electronic state that has an allowed optical transition

Methodology Applied
Scientific EffectOptical transition:

Implementation Method 4

The use of chromophores attached to a nucleotide architecture allows for the self-assembly of complex structures with precise placement of chromophores

Methodology Applied
Scientific EffectSelf-assembly: Self-Assembly

Data Source

PatentUS12173027B2Excitonic quantum computing mediated by chromophore-embedded 1-, 2-, and 3-dimensional DNA scaffolds
Publication Date: 2024.12.24 BOISE STATE UNIVERSITY
  • US12173027B2 patent drawing
  • US12173027B2 patent drawing
  • US12173027B2 patent drawing

AI summary

Using nucleotide architectures to very closely and precisely placed chromophores that produce quantum coherent excitons, biexcitons, and triexcitons upon excitement to create excitonic quantum wires, switching, and gates that would then form the basis of quantum computation. Creating the various excitons and controlling the timing of the excitons would be performed using light of the corresponding wavelength and polarization to stimulate the corresponding chromophores.