Stabilized DNA Colloidal Crystals via Cross-Linking

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Solution Overview

Problem

Existing methods for stabilizing DNA-engineered colloidal crystals either limit their flexibility or fail to maintain stability in various chemical environments, and conventional stabilization techniques like silica embedding or solvent-dependent linkers do not effectively utilize the structural potential of DNA.

Innovation Solution

The use of inter-strand DNA cross-linking reagents, such as bis-chloroethylnitrosourea (BCNU) and 8-methoxypsoralen (8-MOP), to covalently cross-link hybridized anchor and linker strands within the crystals, enhancing thermal and chemical stability while preserving solvent responsiveness.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If silica embedding or silver ion post-treatment is used to stabilize colloidal crystals, then thermal and chemical stability is significantly enhanced, but the flexibility and ability to contract and expand is limited

Engineering Contradiction:
Improvethermal and chemical stabilityVSAvoidflexibility to contract and expand
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent uses disulfide crosslinking as an intermediary mechanism that selectively stabilizes only the DNA hybridized state. The disulfide bonds form between cysteine residues on the DNA strands when they are hybridized, creating a stable network that locks the crystal structure. This intermediary crosslinking mechanism provides thermal and chemical stability while preserving the flexibility needed for contraction and expansion, because the crosslinks only form when DNA strands are properly hybridized and can dynamically respond to environmental changes.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Stability of the object's composition

If conventional stabilization methods are used, then crystal structure is maintained, but the DNA structural links are essentially frozen and cannot respond to environmental stimuli

Engineering Contradiction:
Improvecrystal structure stabilityVSAvoidsolvent-dependent responsiveness
Core Design Contradiction:
Stability of the object's compositionVSAdaptability or versatility

Solution Approach 1:

The patent employs disulfide crosslinking that changes its bonding state based on environmental parameters. The disulfide bonds can form and break dynamically in response to changes in solvent conditions, temperature, and chemical environment. This parameter-dependent crosslinking mechanism allows the crystal structure to remain stable under normal conditions while maintaining the ability to respond to environmental stimuli, thus preserving solvent-dependent responsiveness without sacrificing structural stability.

Inventive Principle:
Principle #35Parameter changes

3Manufacturing precision

If DNA sequences are used as the primary structural links, then precise control over crystal structure is achieved, but stability in various chemical environments is insufficient

Engineering Contradiction:
Improvecrystal structure controlVSAvoidstability in chemical environments
Core Design Contradiction:
Manufacturing precisionVSReliability

Solution Approach 1:

The patent creates a composite stabilization system that combines DNA structural links with disulfide crosslinks. The DNA sequences provide precise control over crystal structure formation and positioning, while the disulfide crosslinks provide enhanced stability in various chemical environments. This composite approach integrates two different mechanisms: the programmable DNA hybridization for structural precision and the chemically stable disulfide bonds for environmental robustness, achieving both precise crystal structure control and reliable stability.

Inventive Principle:
Principle #40Composite materials

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The method significantly increases the thermal and chemical stability of DNA-engineered colloidal crystals, allowing them to maintain long-range order and crystallinity in diverse solvents and extreme conditions, including high temperatures and acidic/basic solutions, while retaining their stimuli-responsive properties.

Implementation Method 1

inter-strand DNA cross-linking reagents... to covalently cross-link hybridized anchor and linker strands within the crystals

Methodology Applied
Scientific EffectCovalent cross-linking: Chemical Bonding

Implementation Method 2

8-methoxypsoralen (8-MOP)... Photo-cross-linking of cyanovinylcarbozole groups incorporated within DNA sequences

Methodology Applied
Scientific EffectPhotoaddition: Photopolymerisation

Data Source

PatentUS11896943B2Stabilized colloidal crystals and methods of stabilizing colloidal crystals
Publication Date: 2024.02.13 THE UNITED STATES OF AMERICA AS REPRESENTED BY THE SECRETARY OF THE NAVY
  • US11896943B2 patent drawing
  • US11896943B2 patent drawing
  • US11896943B2 patent drawing

AI summary

Methods of stabilizing DNA-engineered crystals can include cross-linking the hybridized oligonucleotides. Stabilized crystals can have improved chemical and thermal stability.