Endogenous TCR Replacement for Rapid Antigen-Specific T Cell Editing

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Solution Overview

Problem

Developing entirely new types of T cell receptors for adoptive cellular therapeutics is time-consuming and expensive, and existing methods fail to leverage the body's natural production of endogenous TCRs with desired antigen specificity.

Innovation Solution

Inserting a heterologous TCR into a targeted region of the T cell genome under the control of an endogenous TCR promoter, using methods such as homology-directed repair (HDR) and targeted nucleases to replace the endogenous TCR with a desired antigen specificity.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Adaptability or versatility

If entirely new types of T cell receptors are developed for adoptive cellular therapeutics, then the desired antigen specificity can be achieved, but the process is time-consuming and expensive

Engineering Contradiction:
Improveantigen specificityVSAvoiddevelopment time
Core Design Contradiction:
Adaptability or versatilityVSLoss of time

Solution Approach 1:

The patent applies preliminary action by pre-characterizing and storing endogenous TCR sequences from healthy donors before therapy is needed. These pre-existing TCRs with desired antigen specificities are ready to be rapidly transferred to patient T cells via viral vectors, eliminating the need for de novo development and significantly reducing therapy time

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent uses copying by transferring endogenous TCR sequences from donor T cells to recipient T cells through viral vectors. Instead of developing new TCRs from scratch, the desired TCR sequences are copied and inserted into patient T cells, achieving the same functional outcome much faster and more cost-effectively

Inventive Principle:
Principle #26Copying

2Adaptability or versatility

If entirely new types of T cell receptors are developed for adoptive cellular therapeutics, then the desired antigen specificity can be achieved, but the process is expensive

Engineering Contradiction:
Improveantigen specificityVSAvoiddevelopment cost
Core Design Contradiction:
Adaptability or versatilityVSEase of manufacture

Solution Approach 1:

The patent employs copying by utilizing existing endogenous TCR sequences from healthy donor T cells rather than synthesizing new TCRs. The TCR sequences are extracted, characterized, and transferred via viral vectors to patient T cells, significantly reducing development costs compared to creating entirely new receptor types

Inventive Principle:
Principle #26Copying

Solution Approach 2:

The patent applies self-service by leveraging the body's natural production of endogenous TCRs with desired antigen specificities. Instead of externally developing and manufacturing new TCRs, the therapy utilizes and transfers pre-existing TCRs that the immune system naturally produces, reducing dependency on expensive external R&D resources

Inventive Principle:
Principle #25Self-service

3Adaptability or versatility

If endogenous TCRs are used with desired antigen specificity, then the body's natural production is leveraged, but the TCRs must be transferred to patient T cells

Engineering Contradiction:
Improveantigen specificityVSAvoidtransfer mechanism
Core Design Contradiction:
Adaptability or versatilityVSDevice complexity

Solution Approach 1:

The patent uses viral vectors as intermediaries to transfer endogenous TCR sequences from donor T cells to recipient patient T cells. The viral vector serves as a mediator that carries the TCR sequences and integrates them into the patient's T cell genome, enabling the transfer process while maintaining the desired antigen specificity

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Facilitates the rapid and cost-effective generation of T cells with specific antigen recognition, enhancing the efficacy of adoptive cell therapies by leveraging the body's natural TCR repertoire.

Implementation Method 1

introducing a targeted nuclease that cleaves a target region in exon 1 of a TCR-alpha subunit constant gene (TRAC) to create an insertion site in the genome of the T cell

Methodology Applied
Scientific EffectTargeted nuclease cleavage:

Implementation Method 2

the nucleic acid sequence is incorporated into the insertion site by homology directed repair (HDR)

Methodology Applied
Scientific EffectHomology-directed repair:

Data Source

PatentUS20250361287A1Targeted replacement of endogenous t cell receptors
Publication Date: 2025.11.27 RGT UNIV OF CALIFORNIA
  • US20250361287A1 patent drawing
  • US20250361287A1 patent drawing
  • US20250361287A1 patent drawing

AI summary

Provided herein are methods and compositions for editing the genome of a human T cell. In some embodiments, a heterologous T cell receptor (TCR)-β chain and a heterologous TCR-α chain are inserted into exon 1 of a TCR subunit constant gene in the genome of the T cell.