Endophytic Bacterial RNA Delivery for Plant Pathogen Biocontrol

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Solution Overview

Problem

Current methods for controlling plant pathogens and pests, such as transgenic plants and chemical pesticides, face limitations including resistance development, social opposition, and inefficiency, while bacterial delivery of inhibitory RNA molecules for biocontrol is poorly understood and inefficient.

Innovation Solution

A novel trans-kingdom delivery system using genetically modified endophytic bacteria to express inhibitory RNA molecules, such as hairpin RNA (hpRNA), small interfering RNA (siRNA), and microRNA, targeting pathogen-specific genes to suppress their expression and replication.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If transgenic plants are used to control plant pathogens and pests, then disease and pest resistance is improved, but social opposition and regulatory restrictions increase

Engineering Contradiction:
Improvedisease and pest resistanceVSAvoidsocial acceptance and regulatory compliance
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent uses bacteria as intermediary organisms to deliver inhibitory RNA molecules to plants. Instead of directly modifying plant genetics (transgenic approach), the bacteria serve as a mediator that produces and delivers the RNA molecules that suppress pathogen and pest genes. This indirect approach avoids creating transgenic plants while still achieving biocontrol, thereby reducing social opposition and regulatory restrictions while maintaining disease and pest resistance.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Reliability

If chemical pesticides are used to control plant pathogens and pests, then immediate protection is improved, but environmental pollution and health concerns increase

Engineering Contradiction:
Improvepathogen and pest control effectivenessVSAvoidenvironmental pollution and health risks
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent replaces chemical pesticides with a biological mechanism involving bacteria that produce inhibitory RNA molecules. Instead of applying external chemicals that pollute the environment, the system uses living organisms (bacteria) that naturally colonize plants and produce RNA molecules that specifically target and silence pathogen and pest genes. This substitution eliminates chemical pollution and health risks while maintaining control effectiveness through sequence-specific RNA interference.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

3Adaptability or versatility

If bacterial delivery of inhibitory RNA molecules is used for biocontrol, then sustainability and reduced chemical input are improved, but delivery efficiency and understanding are poor

Engineering Contradiction:
Improvesustainability and reduced chemical dependencyVSAvoiddelivery efficiency and system performance
Core Design Contradiction:
Adaptability or versatilityVSProductivity

Solution Approach 1:

The patent employs bacteria that naturally colonize plant surfaces and tissues to deliver inhibitory RNA molecules. The bacteria utilize their own natural colonization mechanisms and metabolic processes to produce, transport, and deliver the RNA molecules directly to the plant-pathogen interface. This self-service approach leverages the bacteria's inherent biological capabilities rather than requiring complex external delivery systems, thereby improving delivery efficiency while maintaining sustainability and reduced chemical input.

Inventive Principle:
Principle #25Self-service

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Effectively down-regulates or eliminates viral and fungal protein accumulation, inhibits pest growth, and enhances plant resistance to pathogens and pests without the drawbacks of traditional methods, offering a sustainable and economically viable biocontrol solution.

Implementation Method 1

A novel trans-kingdom delivery system using genetically modified endophytic bacteria to express inhibitory RNA molecules, such as hairpin RNA (hpRNA), small interfering RNA (siRNA), and microRNA, targeting pathogen-specific genes to suppress their expression and replication

Methodology Applied
Scientific EffectRNA interference:

Data Source

PatentUS12426568B2System and methods for the biocontrol of plant pathogens
Publication Date: 2025.09.30 PEBBLE LABS INC
  • US12426568B2 patent drawing
  • US12426568B2 patent drawing
  • US12426568B2 patent drawing

AI summary

The inventive technology relates to novel systems, methods, and strategies for the control of plant pathogens and herbivores. The inventive technology may specifically include novel compositions, systems, and methods configured to deliver inhibitory RNA molecules to a pathogen-infected plant. In a preferred embodiment, the invention may include genetically engineered endophytic bacteria configured to deliver one or more inhibitory RNA molecules to a pathogen-infected plant. One preferred embodiment may include a novel trans-kingdom delivery of hairpin RNA targeting viral encoded proteins resulting in the reduction of viral protein accumulation levels.