Metabolically Engineered Cells for Fermentative Production

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Solution Overview

Problem

Current microbial fermentative production methods for disaccharides, oligosaccharides, and Neu(n)Ac-containing bioproducts face challenges in achieving high yields due to insufficient utilization of carbon sources, limiting productivity and growth speed.

Innovation Solution

Metabolically engineering cells to enhance acetyl-Coenzyme A synthesis, which positively impacts the fermentative production of these compounds, improving yield, productivity, and growth speed.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If conventional fermentation methods are used with standard metabolic pathways, then the production process is simple, but the yield and productivity of disaccharides, oligosaccharides, and Neu(n)Ac-containing bioproducts are limited due to insufficient carbon source utilization

Engineering Contradiction:
Improveyield and productivity of disaccharides, oligosaccharides, and Neu(n)Ac-containing bioproductsVSAvoidmetabolic engineering complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent applies parameter changes by modifying key metabolic parameters - specifically enhancing acetyl-CoA synthesis capacity through metabolic engineering. This involves altering the metabolic state of the host cell to increase acetyl-CoA availability, which then flows into improved production of the target compounds. The approach changes the metabolic parameters (acetyl-CoA levels, flux distribution) to achieve higher productivity.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent uses acetyl-CoA as an intermediary substance to connect carbon source utilization with final product formation. By enhancing acetyl-CoA synthesis, the patent creates a metabolic intermediary that channels carbon flow more efficiently toward disaccharide, oligosaccharide, and Neu(n)Ac-containing bioproduct formation. The acetyl-CoA acts as a central hub that mediates between glycolysis and the biosynthetic pathways for the target compounds.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Productivity

If carbon source utilization is insufficient in conventional fermentation, then the process is easier to operate, but the growth speed and productivity are limited

Engineering Contradiction:
Improvegrowth speed and productivityVSAvoidmetabolic engineering complexity
Core Design Contradiction:
ProductivityVSEase of manufacture

Solution Approach 1:

The patent changes the metabolic parameter of acetyl-CoA synthesis capacity to improve growth speed and productivity. By enhancing the enzymes or pathways that produce acetyl-CoA, the patent increases the availability of this critical metabolite for both growth and product formation, thereby improving overall productivity and growth kinetics.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent applies preliminary action by pre-enhancing acetyl-CoA synthesis capacity before the actual production phase. The metabolic engineering modifications are made in advance to ensure that sufficient acetyl-CoA is available from the outset, enabling faster growth and higher productivity without needing to adjust conditions during fermentation.

Inventive Principle:
Principle #10Preliminary action

3Productivity

If acetyl-CoA synthesis is enhanced through metabolic engineering, then the yield and specific productivity improve, but the metabolic pathway complexity increases

Engineering Contradiction:
Improvespecific productivity and yieldVSAvoidmetabolic pathway complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent focuses on changing specific metabolic parameters - enhancing acetyl-CoA synthesis through targeted metabolic engineering. This involves modifying specific enzymes or regulatory points in the acetyl-CoA production pathway, rather than redesigning the entire metabolic network. The approach changes key parameters (enzyme activity, flux control) to achieve higher specific productivity while managing complexity.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent applies segmentation by dividing the metabolic engineering task into focused modifications of specific pathways leading to acetyl-CoA production, rather than attempting to redesign the entire metabolic network. The approach segments the complexity into manageable parts - specifically targeting glycolysis, pyruvate metabolism, and acetyl-CoA synthesis pathways - while leaving other cellular functions relatively intact.

Inventive Principle:
Principle #1Segmentation

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The enhanced acetyl-Coenzyme A synthesis in metabolically engineered cells leads to increased production efficiency and productivity of disaccharides, oligosaccharides, and Neu(n)Ac-containing bioproducts, addressing the limitations of existing production methods.

Implementation Method 1

Fermentation using e.g. microorganism using inexpensive carbon sources such as glucose or other sugars to produce compounds such as oligosaccharides and Neu(n)Ac-containing bioproducts

Methodology Applied
Scientific EffectFermentation: Fermentation

Data Source

PatentUS20240191270A1Fermentative production
Publication Date: 2024.06.13 INBIOSE NV

AI summary

The present invention is in the technical field of synthetic biology and metabolic engineering. More particularly, the present invention is in the technical field of metabolically engineered cells and use of said cell in a cultivation, preferably a fermentation. The present invention describes a cell for the production of a compound. The cell comprises a pathway for the production of the compound, which can be a disaccharide, oligosaccharide and/or a Neu(n)Ac-containing bioproduct, wherein (n) is 4, 5, 7, 8 or 9 or a combination thereof. The cell is metabolically engineered for enhanced synthesis of acetyl-Coenzyme A. The invention also resides in a method of producing such compound by cultivation, preferably a fermentation, with such a cell.