Engineered Microorganisms for Syngas Conversion to 1,3-Butanediol

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Solution Overview

Problem

Current organisms capable of utilizing syngas for chemical production are poorly characterized, intolerant to high concentrations of products like butanol, produce multiple unwanted products, and lack genetic tools for improvement, limiting the commercialization of 1,3-butanediol production.

Innovation Solution

Development of non-naturally occurring microbial organisms with engineered pathways that include specific enzymes to efficiently convert carbohydrates, methanol, and syngas into 1,3-butanediol, utilizing the Wood-Ljungdahl pathway and MtaABC-type methyltransferase system to optimize production.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If known organisms (Clostridium spp.) are used for syngas utilization, then syngas conversion capability is achieved, but product tolerance is poor and commercialization is limited

Engineering Contradiction:
Improveproduct toleranceVSAvoidcommercialization potential
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent uses a heterologous expression system where the target pathway enzymes are expressed in a robust host organism (E. coli or C. glutamicum) rather than attempting to improve the native syngas-utilizing organisms. This approach treats the expression system as a disposable platform that can be rapidly engineered and optimized without being constrained by the physiological limitations of the original syngas-utilizing Clostridium species.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Solution Approach 2:

The patent fundamentally changes the host organism parameters from native syngas-utilizing Clostridium species to model organisms with well-established genetic tools (E. coli, C. glutamicum). This parameter change enables better product tolerance, higher productivity, and easier genetic manipulation while maintaining syngas conversion capability through heterologous expression of the required pathway enzymes.

Inventive Principle:
Principle #35Parameter changes

2Productivity

If Clostridium organisms are used for 1,3-BDO production, then syngas utilization is achieved, but product selectivity is poor due to multiple product formation

Engineering Contradiction:
Improve1,3-BDO yieldVSAvoidproduct selectivity
Core Design Contradiction:
ProductivityVSManufacturing precision

Solution Approach 1:

The patent extracts only the essential syngas utilization capability (acetyl-CoA synthase/CO dehydrogenase complex) from Clostridium organisms and transfers it to host organisms that naturally produce fewer byproducts. This extraction approach separates the syngas conversion function from the problematic multiple product formation, allowing selective production of 1,3-BDO.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent uses universal host organisms (E. coli, C. glutamicum) that can perform multiple functions: they can utilize syngas through heterologous expression of acetyl-CoA synthase, produce 1,3-BDO through the engineered pathway, and maintain robust growth characteristics. This multi-functionality in a single host system resolves the selectivity issue by consolidating all desired functions in an organism optimized for high-yield single product formation.

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Adaptability or versatility

If Clostridium organisms are used for syngas conversion, then natural syngas utilization capability is achieved, but genetic manipulation is difficult

Engineering Contradiction:
Improvegenetic engineering capabilityVSAvoidyield improvement potential
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The patent introduces an intermediary system - heterologous expression of the acetyl-CoA synthase/CO dehydrogenase complex from Clostridium in model organisms. This intermediary approach allows the benefits of Clostridium's natural syngas utilization to be harnessed while avoiding its genetic manipulation limitations, as the host organisms have well-developed genetic tools for precise yield optimization.

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The engineered organisms achieve high yields of 1,3-butanediol from diverse carbon sources, including syngas and methanol, with improved tolerance and selectivity, reducing production costs and environmental impact.

Implementation Method 1

utilizing the Wood-Ljungdahl pathway and MtaABC-type methyltransferase system to optimize production

Methodology Applied
Scientific EffectWood-Ljungdahl pathway:

Implementation Method 2

MtaABC-type methyltransferase system

Methodology Applied
Scientific EffectMethyltransferase catalysis: Catalysis

Data Source

PatentUS8268607B2Methods and organisms for converting synthesis gas or other gaseous carbon sources and methanol to 1,3-butanediol
Publication Date: 2012.09.18 GENOMATICA INC
  • US8268607B2 patent drawing
  • US8268607B2 patent drawing
  • US8268607B2 patent drawing

AI summary

A non-naturally occurring microbial organism having a 1,3-butanediol (1,3-BDO) pathway includes at least one exogenous nucleic acid encoding a 1,3-BDO pathway enzyme or protein expressed in a sufficient amount to produce 1,3-BDO. A method for producing 1,3-BDO that includes culturing the this non-naturally occurring microbial organism under conditions and for a sufficient period of time to produce 1,3-BDO.