Evanescent Waveguide Substrates for Illumination Control

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Solution Overview

Problem

Current analytical systems face challenges in providing precise and controlled illumination over large areas, particularly in the z-axis, while minimizing illumination of non-relevant regions and reducing auto-fluorescence noise, which affects the accuracy of analyses such as DNA arrays and molecular interactions.

Innovation Solution

The use of substrates with surface-exposed optical waveguides that exploit evanescent fields to deliver focused illumination to discrete regions, eliminating the need for a cladding layer and reducing background illumination, thereby enhancing control over the illumination volume and minimizing auto-fluorescence.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Area of stationary object

If wide area illumination is used to interrogate large numbers of analytical features, then the area of substrate illuminated is improved, but the precision of illumination control in the z-axis deteriorates

Engineering Contradiction:
Improvearea of substrate illuminatedVSAvoidillumination control precision
Core Design Contradiction:
Area of stationary objectVSManufacturing precision

Solution Approach 1:

The illumination system is segmented into multiple independent waveguide elements, each capable of delivering light to a specific location on the substrate. This allows selective activation of individual waveguides to illuminate only the required area, maintaining precision while enabling flexible area coverage.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

Each waveguide provides localized illumination with controlled evanescent field decay in the z-axis direction. The illumination intensity is naturally confined to a specific depth range, providing precise z-axis control at each illuminated location while allowing multiple locations to be addressed.

Inventive Principle:
Principle #3Local quality

2Area of stationary object

If conventional illumination methods are used to illuminate large areas, then the area of substrate illuminated is improved, but auto-fluorescence noise increases

Engineering Contradiction:
Improvearea of substrate illuminatedVSAvoidauto-fluorescence noise
Core Design Contradiction:
Area of stationary objectVSObject-generated harmful factors

Solution Approach 1:

By segmenting the illumination into discrete waveguide locations, only the specific areas requiring analysis are illuminated. This minimizes the total illuminated volume and reduces background auto-fluorescence from surrounding regions, improving signal-to-noise ratio.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The evanescent field provides highly localized illumination that decays exponentially with distance from the waveguide surface. This confines excitation light to the immediate vicinity of the substrate, minimizing illumination of surrounding areas and reducing background fluorescence noise.

Inventive Principle:
Principle #3Local quality

3Reliability

If cladding layers are used in waveguide structures, then the waveguide structure is completed, but the complexity of the device increases

Engineering Contradiction:
Improvewaveguide structure integrityVSAvoiddevice complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The cladding layer is extracted or removed from the waveguide structure, allowing direct access to the core evanescent field at the substrate interface. This simplifies the overall device architecture while maintaining the essential waveguide functionality for controlled light delivery.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The waveguide core itself provides the necessary optical confinement and evanescent field generation without requiring an additional cladding layer. The substrate-w waveguide interface naturally produces the required field distribution, eliminating the need for complex multi-layer structures.

Inventive Principle:
Principle #25Self-service

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach allows for efficient, spatially focused illumination with reduced noise, enabling precise analysis of surface-bound materials and improving the accuracy of assays by confining light to specific areas and reducing interference from surrounding environments.

Implementation Method 1

an analyte disposed sufficiently proximal to the first surface and external to the waveguide, to be illuminated by an evanescent field emanating from the waveguide when light is passed through the waveguide

Methodology Applied
Scientific EffectEvanescent field: Total Internal Reflection

Data Source

PatentUS9587276B2Substrates, systems and methods for analyzing materials
Publication Date: 2017.03.07 PACIFIC BIOSCIENCES OF CALIFORNIA INC
  • US9587276B2 patent drawing
  • US9587276B2 patent drawing
  • US9587276B2 patent drawing

AI summary

Substrates, systems and methods for analyzing materials that include waveguide arrays disposed upon or within the substrate such that evanescent fields emanating from the waveguides illuminate materials disposed upon or proximal to the surface of the substrate, permitting analysis of such materials. The substrates, systems and methods are used in a variety of analytical operations, including, inter alia, nucleic acid analysis, including hybridization and sequencing analyses, cellular analyses and other molecular analyses.