FAIMS Ion Filtering for Mass Spectrometer Duty Cycle Improvement

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Solution Overview

Problem

Current mass spectrometers face reduced duty cycles due to the limited storage capacity of storage traps being quickly filled by singly-charged ions, which reduces the number of analytically significant multiply-charged ions available for analysis, particularly in bottom-up proteomics experiments.

Innovation Solution

Implementing ion mobility separation, specifically using a field asymmetric-waveform ion-mobility spectrometry (FAIMS) device to filter out singly-charged ions and preferentially transmit multiply-charged ions, combined with an ion accumulator and storage trap to manage ion flow based on the mass analyzer's availability for analysis.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Quantity of substance

If the storage trap accepts all ions from the ion source, then the storage trap reaches capacity quickly, but the duty cycle decreases and multiply-charged ions are wasted

Engineering Contradiction:
Improvenumber of ions storedVSAvoidduty cycle
Core Design Contradiction:
Quantity of substanceVSProductivity

Solution Approach 1:

The ion mobility separator extracts and removes singly-charged ions from the ion stream before ions enter the storage trap. By taking out the harmful singly-charged ions that quickly fill the storage trap, the system allows multiply-charged ions to be stored and analyzed without the storage trap reaching capacity prematurely, thereby improving the duty cycle while maintaining adequate ion storage quantities

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The ion mobility separator acts as an intermediary device between the ion source and the storage trap. It selectively transmits multiply-charged ions while blocking singly-charged ions, serving as a filtering mediator that optimizes the composition of ions entering the storage trap. This intermediary function ensures that the storage trap receives primarily multiply-charged ions, improving both the duty cycle and the quality of ions available for analysis

Inventive Principle:
Principle #24Intermediary (Mediator)

2Quantity of substance

If the storage trap capacity is increased, then more ions can be stored, but the device complexity increases

Engineering Contradiction:
Improvestorage capacityVSAvoidsystem complexity
Core Design Contradiction:
Quantity of substanceVSDevice complexity

Solution Approach 1:

Rather than increasing the storage trap capacity to handle all ions, the system extracts singly-charged ions before they enter the storage trap. This approach maintains the original storage trap capacity while effectively increasing the number of useful multiply-charged ions that can be stored, avoiding the complexity and cost associated with enlarging the storage trap

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The ion mobility separator serves as an intermediary filtering device that simplifies the overall system architecture compared to increasing storage capacity. By placing a relatively simple ion mobility separation stage before the storage trap, the system achieves better ion storage efficiency without the complex engineering required to design and implement a larger storage trap

Inventive Principle:
Principle #24Intermediary (Mediator)

3Productivity

If ion mobility separation is implemented, then multiply-charged ion transmission is improved, but the device complexity increases

Engineering Contradiction:
Improveduty cycleVSAvoidsystem complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The ion mobility separator operates continuously to separate singly-charged ions from multiply-charged ions throughout the ion beam generation process. This continuous separation ensures that multiply-charged ions are consistently transmitted to the storage trap without interruption, maximizing the duty cycle improvement while using a compact device that does not significantly add to system complexity

Inventive Principle:
Principle #20Continuity of useful action

Solution Approach 2:

The ion mobility separator uses electrical fields and ion mobility differences rather than mechanical filtration or separation mechanisms. This non-mechanical approach to ion separation avoids the complexity of moving parts and mechanical systems, achieving effective ion separation through electromagnetic fields while keeping the device relatively simple and maintenance-free

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach significantly increases the duty cycle of the mass spectrometer by allowing more multiply-charged ions to be analyzed, improving data quality and efficiency by reducing the waste of ions and optimizing ion storage and transmission.

Implementation Method 1

a field asymmetric-waveform ion-mobility spectrometry (FAIMS) device configured to receive the singly-charged ions and the multiply-charged ions, and preferentially transmit multiply-charged ions

Methodology Applied
Scientific EffectIon mobility separation: Electrophoresis

Implementation Method 2

an ion accumulator arranged to receive and confine the ions transmitted by the FAIMS device

Methodology Applied
Scientific EffectIon confinement: Electrostatics

Implementation Method 3

a storage trap configured to receive the ions released from the ion accumulator and store the released ions

Methodology Applied
Scientific EffectElectrostatic trapping: Electrostatics

Implementation Method 4

an electrospray ionization (ESI) source configured to receive a component separated from the biological sample and generate singly-charged ions and multiply-charged ions from the component

Methodology Applied
Scientific EffectElectrospray ionization: Electrostatics

Data Source

PatentEP3862751B1Duty cycle improvement for a mass spectrometer using ion mobility separation
Publication Date: 2025.09.03 THERMO FINNIGAN LLC
  • EP3862751B1 patent drawingFigure 1
  • EP3862751B1 patent drawingFigure 2
  • EP3862751B1 patent drawingFigure 3

AI summary

Using ion mobility separation to improve a duty cycle of a mass spectrometer is described. In one aspect, a mass spectrometer can use an ion-mobility spectrometer to allow for more multiply-charged ions to transmit through than singly-charged ions. This results in a mass analyzer to perform a mass analysis with more multiply-charged ions.