Fluorescence Detector Surface and Light Guides for Background Noise

Resolve Bottlenecks,
Find Innovative Solutions
Generate Solutions

Solution Overview

Problem

Existing fluorescent detection systems face challenges with high background noise and autofluorescence, which degrade the signal-to-noise ratio and hinder accurate detection of biological or chemical analytes.

Innovation Solution

The development of a detector system that incorporates a sensor array with light sensors and circuitry, along with light guides made from filter materials containing photon emission quenchers, such as metal complex dyes, to block excitation light and reduce autofluorescence, while also featuring a detector surface that cancels background light energy in the detection band.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Adaptability or versatility

If wide spectral bandwidth fluorescent dyes are used to excite multiple fluorophores, then spectral overlap and fluorescence range noise increase, but using narrow bandwidth dyes limits the ability to excite multiple fluorophores simultaneously

Engineering Contradiction:
Improveability to excite multiple fluorophoresVSAvoidspectral overlap and fluorescence range noise
Core Design Contradiction:
Adaptability or versatilityVSObject-affected harmful factors

Solution Approach 1:

The patent segments the excitation process by using multiple separate laser sources, each tuned to a specific wavelength, rather than using a single wide-bandwidth source. This allows selective excitation of different fluorophores at different time points while maintaining the ability to excite multiple fluorophores in the same sample

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent employs periodic action by rapidly switching between multiple laser wavelengths in a time-multiplexed manner. Each fluorophore is excited at specific time intervals corresponding to its optimal excitation wavelength, enabling multi-fluorophore detection without spectral overlap

Inventive Principle:
Principle #19Periodic action

2Ease of operation

If continuous wave laser excitation is used, then the system is simple to operate, but fluorescence saturation occurs reducing measurement precision

Engineering Contradiction:
Improvesimplicity of operationVSAvoidfluorescence measurement accuracy
Core Design Contradiction:
Ease of operationVSMeasurement precision

Solution Approach 1:

The patent replaces continuous wave excitation with pulsed laser excitation, where lasers emit light in periodic pulses rather than continuously. This temporal modulation prevents fluorescence saturation by allowing the fluorescent molecules to return to their ground state between pulses, thereby maintaining measurement precision while keeping the system relatively simple to operate

Inventive Principle:
Principle #19Periodic action

3Illumination intensity

If high laser power is used to excite fluorophores, then signal intensity increases, but photobleaching and cellular damage occur reducing reliability

Engineering Contradiction:
Improvefluorescence signal intensityVSAvoidsample integrity and measurement consistency
Core Design Contradiction:
Illumination intensityVSReliability

Solution Approach 1:

The patent uses pulsed laser excitation where high power is delivered only during brief pulse intervals rather than continuously. This periodic delivery maintains high signal intensity during detection while providing rest periods that prevent photobleaching and reduce cellular damage, thereby improving measurement reliability

Inventive Principle:
Principle #19Periodic action

Solution Approach 2:

The patent maintains continuous detection capability through rapid pulsing, where the cumulative effect of many short pulses provides sufficient total signal while minimizing damage. The system continuously monitors fluorescence over time using repeated low-duty-cycle pulses, preserving both signal quality and sample integrity

Inventive Principle:
Principle #20Continuity of useful action

4Adaptability or versatility

If multiple laser wavelengths are used to excite different fluorophores, then multi-color imaging capability improves, but system complexity and alignment difficulty increase

Engineering Contradiction:
Improvemulti-color imaging capabilityVSAvoidlaser alignment and system configuration
Core Design Contradiction:
Adaptability or versatilityVSDevice complexity

Solution Approach 1:

The patent introduces an intermediary element (such as a beam combining apparatus or dichroic mirrors) that merges multiple laser wavelengths into a single excitation path. This intermediary component simplifies the overall system by consolidating multiple laser sources while maintaining the ability to selectively excite different fluorophores through wavelength-specific optics

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This solution significantly enhances the signal-to-noise ratio by reducing autofluorescence and background noise, leading to more accurate and reliable detection of fluorescent signals from analytes.

Implementation Method 1

excitation of 488 nm fluorophores

Methodology Applied
Scientific EffectFluorescence: Fluorescence

Implementation Method 2

excitation of 561 nm fluorophores

Methodology Applied
Scientific EffectFluorescence: Fluorescence

Implementation Method 3

excitation of 647 nm fluorophores

Methodology Applied
Scientific EffectFluorescence: Fluorescence

Implementation Method 4

light scattering and fluorescence emission

Methodology Applied
Scientific EffectLight scattering: Scattering

Data Source

PatentEP3978908B1Device with reduced fluorescence range noise and method
Publication Date: 2025.05.07 ILLUMINA INC
  • EP3978908B1 patent drawingFigure 1
  • EP3978908B1 patent drawingFigure 2~3
  • EP3978908B1 patent drawingFigure 4~6

AI summary

A device comprising: a structure (260) defining a detector surface (206) for supporting biological or chemical samples; a sensor array (201) comprising light sensors (202), and circuitry to transmit data signals based on photons detected by the light sensors (202); and a guide array comprising light guides (214); wherein light guides (214) of the guide array receive excitation light (101) and emissions signal light (501) from the detector surface (206), wherein the light guides (214) extend toward respective light sensors (202) of the sensor array (201) and comprise filter material that blocks the excitation light and permits the emissions signal light to propagate toward the respective light sensors (202), wherein the detector surface (206) includes a reaction recess (210), the reaction recess comprising an index of refraction and a dimension sufficient to cancel background light energy incident on the detector surface in a detection band of the sensor array. A method comprising steps for fabricating the device.