Fusion Peptides Enhance Bacterial Membrane Penetration and Targeting

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Solution Overview

Problem

Current antimicrobial peptides struggle to cross the bacterial cell membrane, limiting their effectiveness as antimicrobial agents.

Innovation Solution

Development of fusion peptides comprising proline-rich antimicrobial peptides (PrAMPs) linked with a peptide linker to enhance membrane penetration and target the bacterial sliding clamp and ribosome, specifically designed to interact with the bacterial sliding clamp and ribosome, thereby inhibiting bacterial replication.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If peptides are designed to target the bacterial sliding clamp, then binding affinity to the target is improved, but ability to cross the bacterial cell membrane deteriorates

Engineering Contradiction:
Improvebinding affinityVSAvoidmembrane penetration ability
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent combines two distinct peptide functions into a single fusion peptide: (1) a membrane penetration domain from proline-rich antimicrobial peptides that enables cell entry, and (2) a sliding clamp binding domain that provides target-specific inhibition. This merging resolves the contradiction by integrating both membrane penetration capability and target binding affinity into one molecule, allowing the peptide to successfully deliver its therapeutic function inside bacterial cells.

Inventive Principle:
Principle #5Merging (Combining)

2Reliability

If peptides are designed with high target specificity, then antimicrobial efficacy is improved, but cellular uptake efficiency deteriorates

Engineering Contradiction:
Improvetarget specificityVSAvoidcellular uptake efficiency
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The fusion peptide is segmented into distinct functional modules: an N-terminal membrane penetration domain derived from proline-rich antimicrobial peptides and a C-terminal sliding clamp binding domain with high target specificity. This segmentation allows each domain to independently perform its specialized function - the penetration domain facilitates cellular uptake while the binding domain ensures specific target engagement, thereby resolving the contradiction between uptake efficiency and target specificity.

Inventive Principle:
Principle #1Segmentation

Data Source

PatentUS12098217B2Fusion peptides as antimicrobial agents
Publication Date: 2024.09.24 CENT NAT DE LA RECH SCI (C N R S)
  • US12098217B2 patent drawing
  • US12098217B2 patent drawing
  • US12098217B2 patent drawing

AI summary

The present invention relates to a fusion peptide having one of the following formulae: P1-L-P2 (I) or P2-L-P1 (II) wherein P1 is chosen from the proline-rich antimicrobial peptides; Lisa peptide linker; and P2 has the following formula (III): wherein m is 0 or 1; n is an integer comprised between 0 and 9; p is an integer comprised between 0 and 10; r is 0, 1 or 2; s is 0 or 1; Gln is glutamine; R1 is the side chain of arginine or lysine; R2 is for example a —(CH2)—C3-6-cycloalkyl group optionally substituted; R3 is for example a C1-8-alkyl group; R4 is in particular a C1-8-alkyl group optionally substituted by a C3-6-cycloalkyl group; R5 is for example a —(CH2)—C3-6-cycloalkyl group; R6 is in particular —COOH, wherein, when the fusion peptide has the formula (II), its C-terminus contains a —CO— group engaged in a peptide bond with said linker.