Endogenous Gag Capsids for Precise Nucleic Acid Delivery

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Solution Overview

Problem

Current methods for delivering nucleic acids to cells face limitations such as immunogenicity, limited payload capacity, poor bio-distribution, and off-target effects, necessitating the development of new approaches for precise and efficient therapeutic delivery.

Innovation Solution

The use of recombinant and engineered Arc and endogenous Gag polypeptides to form capsids that can encapsulate and deliver therapeutic agents, such as RNA, to specific sites within cells, leveraging their ability to assemble into capsids for targeted cargo delivery.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If current methods for delivering nucleic acids to cells are used, then delivery can be achieved, but immunogenicity occurs and off-target effects are caused

Engineering Contradiction:
Improvedelivery precisionVSAvoidimmunogenicity and off-target effects
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent uses endogenous Gag polypeptides as intermediary carriers to deliver therapeutic nucleic acids. These polypeptides form capsids that serve as mediators between the therapeutic agent and target cells, enabling precise delivery while reducing immunogenicity and off-target effects compared to traditional viral vectors

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent modifies parameters of the delivery system by using recombinant and engineered Arc and endogenous Gag polypeptides with specific amino acid sequences (SEQ ID NO: 1-28). These parameter changes in polypeptide structure enable controlled capsid formation with optimized delivery properties, reducing harmful effects while maintaining delivery precision

Inventive Principle:
Principle #35Parameter changes

2Quantity of substance

If current nucleic acid delivery methods are used, then delivery can be achieved, but payload capacity is limited

Engineering Contradiction:
Improvepayload capacityVSAvoiddelivery efficiency
Core Design Contradiction:
Quantity of substanceVSReliability

Solution Approach 1:

The patent employs a nested structure where therapeutic nucleic acids are encapsulated within capsids formed by endogenous Gag polypeptides. This nesting approach allows the capsid to protect and deliver larger payload capacities while maintaining delivery efficiency through the polypeptide's natural cellular interaction mechanisms

Inventive Principle:
Principle #7Nested doll (Nesting)

3Reliability

If current delivery methods are used, then nucleic acids can be delivered to cells, but bio-distribution is poor

Engineering Contradiction:
Improvedelivery accuracyVSAvoidbio-distribution
Core Design Contradiction:
ReliabilityVSQuantity of substance

Solution Approach 1:

The endogenous Gag polypeptides possess multi-functional capabilities: they can self-assemble into capsids, interact with cellular machinery for targeted delivery, and provide protective encapsulation. This universality enables improved bio-distribution across different cell types while maintaining delivery accuracy through the polypeptides' inherent cellular recognition properties

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach enables precise and efficient delivery of therapeutic agents to cells, reducing off-target effects and improving bio-distribution, while allowing for the modification of cargo binding domains to enhance loading capabilities.

Implementation Method 1

leveraging their ability to assemble into capsids for targeted cargo delivery

Methodology Applied
Scientific EffectSelf-assembly: Self-Assembly

Data Source

PatentUS11505578B2Endogenous Gag-based capsids and uses thereof
Publication Date: 2022.11.22 AERA THERAPEUTICS INC
  • US11505578B2 patent drawing
  • US11505578B2 patent drawing
  • US11505578B2 patent drawing

AI summary

Nucleic acids encoding endogenous Gag peptides can be isolated from various organisms. Nucleic acids encoding various endogenous Gag polypeptides can be isolated from human DNA. The nucleic acids can be used to express endogenous Gag polypeptides that can be assembled into capsids. Endogenous Gag polypeptides and capsids can be used package cargo and/or deliver it to cells, for example, to package and/or deliver a nucleic acid molecule for use in gene editing, such as a component involved in a CRISPR-Cas system.