Extracellular H3.3 Histone Detection and DNase I Degradation for COPD

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Solution Overview

Problem

Current methods lack effective diagnostics and treatments for chronic obstructive pulmonary disease (COPD), particularly in addressing the elevated levels of histone proteins and their post-translational modifications that contribute to lung inflammation and tissue remodeling.

Innovation Solution

Measuring the levels of extracellular H2B, H3, H3.3, or H4 proteins and detecting specific post-translational modifications in these histones to diagnose and stage COPD, along with administering agents like DNase I or antibodies to target and degrade H3.3, reducing toxicity and treating the disease.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Object-affected harmful factors

If histone proteins are present extracellularly to combat microbial infection, then anti-microbial activity is improved, but lung inflammation and tissue damage worsen

Engineering Contradiction:
Improvemicrobial infectionVSAvoidlung inflammation and tissue damage
Core Design Contradiction:
Object-affected harmful factorsVSObject-generated harmful factors

Solution Approach 1:

The patent uses DNase I as an intermediary enzyme that specifically degrades extracellular histone proteins. The enzyme acts as a mediator between the harmful histones and the lung tissue, converting the harmful effect into a beneficial one by selectively removing the toxic extracellular histones while preserving their intracellular anti-microbial function. This resolves the contradiction by introducing a third agent that eliminates the harmful aspect without compromising the protective aspect.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent extracts and removes the harmful extracellular histone proteins from the system using DNase I degradation. By taking out the toxic extracellular component separately from the functional intracellular component, the solution eliminates the harmful effect while preserving the beneficial anti-microbial activity. This extraction approach resolves the contradiction by separating the harmful and beneficial aspects of histone presence.

Inventive Principle:
Principle #2Taking out (Extraction)

2Ease of operation

If conventional antibiotics are used to treat lung infections, then treatment simplicity is improved, but effectiveness against certain pathogens worsens

Engineering Contradiction:
Improvetreatment simplicityVSAvoidinfection treatment effectiveness
Core Design Contradiction:
Ease of operationVSReliability

Solution Approach 1:

The patent changes the therapeutic parameter from conventional antibiotics to histone-based anti-microbial mechanisms. By utilizing the endogenous anti-microbial properties of histone proteins and enhancing them through controlled extracellular presence (followed by DNase I cleanup), the treatment achieves effectiveness against pathogens that may be resistant to conventional antibiotics while maintaining relative treatment simplicity.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent leverages the body's own histone proteins as the anti-microbial agents rather than introducing external antibiotics. The endogenous histones perform the anti-microbial function, and DNase I is used to clean up the resulting extracellular histones. This self-service approach uses the body's existing resources to fight infection, potentially overcoming antibiotic resistance while keeping the treatment protocol simple.

Inventive Principle:
Principle #25Self-service

3Reliability

If histone deacetylase (HDAC) expression is reduced to increase histone acetylation, then inflammatory gene expression is improved, but extracellular histone toxicity worsens

Engineering Contradiction:
Improveinflammatory response regulationVSAvoidextracellular histone toxicity
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent introduces DNase I as an intermediary that specifically targets and degrades extracellular histone proteins. This allows the system to maintain reduced HDAC expression and increased histone acetylation for proper inflammatory regulation, while simultaneously using DNase I to remove the toxic extracellular histones that would otherwise accumulate. The intermediary enzyme resolves the contradiction by enabling one process while mitigating its harmful side effect.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent converts the harmful extracellular histone accumulation into a beneficial situation by using DNase I to degrade these histones into harmless peptides and amino acids. The reduced HDAC expression and increased acetylation that would normally lead to toxic extracellular histones are instead managed productively, where the extracellular histones become the target for controlled degradation rather than sources of toxicity.

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach enables accurate diagnosis and staging of COPD by quantifying histone protein levels and modifications, and provides a treatment method to mitigate the toxic effects of these proteins, potentially improving patient outcomes.

Implementation Method 1

administering agents like DNase I or antibodies to target and degrade H3.3

Methodology Applied
Scientific EffectEnzymatic degradation: Enzyme

Implementation Method 2

administering agents like DNase I or antibodies to target and degrade H3.3

Methodology Applied
Scientific EffectAntigen-antibody binding:

Data Source

PatentUS9933435B2Diagnosis and treatment of chronic obstructive pulmonary disease (COPD) based on elevated levels of extracellular H3 protein
Publication Date: 2018.04.03 TEMPLE UNIV
  • US9933435B2 patent drawing
  • US9933435B2 patent drawing
  • US9933435B2 patent drawing

AI summary

Provided is a method for diagnosing and/or staging COPD based on detection of one or more histone proteins. In some embodiments, the histone protein is an H3.3 protein comprising a post-translational modification. In some embodiments, the histone protein is H2B, H3, H3.3 or H4. Kits for practicing the methods of diagnosis and/or staging are provided as well. Further provided is a method for treating COPD.