HDAC Inhibitors via Hydroxamic Acid Modification

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Solution Overview

Problem

Current compounds for inhibiting histone deacetylase activity, while effective in treating cancer and other diseases, lack improved potency and bioavailability, necessitating the development of new inhibitors with enhanced properties.

Innovation Solution

Development of a novel class of compounds represented by specific chemical formulas that inhibit histone deacetylase, inducing terminal differentiation and apoptosis of neoplastic cells, and are suitable for treating various diseases, including cancer, autoimmune, and neurodegenerative disorders, with pharmaceutical compositions and safe dosing regimens.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If hydroxamic acid derivatives are used to inhibit histone deacetylase, then biological activity as antitumor agents is achieved, but potency and bioavailability are insufficient

Engineering Contradiction:
Improvebiological activityVSAvoidpotency and bioavailability
Core Design Contradiction:
ReliabilityVSQuantity of substance

Solution Approach 1:

The patent modifies the hydroxamic acid derivative structure by changing chemical parameters - specifically replacing the hydroxamic acid moiety with alternative functional groups (amides, carbamates, ureas) and adjusting molecular weight, lipophilicity, and hydrogen bonding capacity to improve potency and bioavailability while maintaining HDAC inhibitory activity

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The invention creates composite molecular structures combining HDAC inhibitor cores with various pharmacophoric groups and linkers, forming hybrid molecules that integrate multiple functional properties - antitumor activity, improved bioavailability, and enhanced potency - into a single compound

Inventive Principle:
Principle #40Composite materials

2Reliability

If new HDAC inhibitors with improved potency are developed, then therapeutic effectiveness is enhanced, but structural complexity increases

Engineering Contradiction:
Improvetherapeutic effectivenessVSAvoidstructural complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent divides the HDAC inhibitor molecule into distinct functional segments - a core inhibitor moiety, linker regions, and terminal pharmacophoric groups - allowing systematic optimization of each segment's contribution to potency while managing overall molecular complexity through modular design

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention applies local quality by introducing specific functional groups at particular positions on the molecular scaffold to enhance binding affinity and selectivity for HDAC enzymes, rather than uniformly increasing complexity throughout the entire molecule

Inventive Principle:
Principle #3Local quality

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The novel compounds effectively inhibit histone deacetylase, selectively inducing terminal differentiation and apoptosis of neoplastic cells, offering improved therapeutic options for cancer and other diseases with enhanced potency and bioavailability.

Implementation Method 1

These compounds can inhibit histone deacetylase and are suitable for use in selectively inducing terminal differentiation, and arresting cell growth and/or apoptosis of neoplastic cells

Methodology Applied
Scientific EffectEnzyme inhibition: Enzyme

Implementation Method 2

histone acetylation and deacetylation are mechanisms by which transcriptional regulation in a cell is achieved

Methodology Applied
Scientific EffectHistone acetylation: Chemical Bonding

Implementation Method 3

These effects are thought to occur through changes in the structure of chromatin by altering the affinity of histone proteins for coiled DNA in the nucleosome

Methodology Applied
Scientific EffectChromatin structure change:

Data Source

PatentEP1991226B1Inhibitors of histone deacetylase
Publication Date: 2013.03.20 MERCK SHARP & DOHME CORP
  • EP1991226B1 patent drawing
  • EP1991226B1 patent drawing
  • EP1991226B1 patent drawing

AI summary

The present invention relates to a novel class of compounds. These compounds can inhibit histone deacetylase and are suitable for use in selectively inducing terminal differentiation, and arresting cell growth and/or apoptosis of neoplastic cells, thereby inhibiting proliferation of such cells. Thus, the compounds of the present invention are useful in treating a patient having a tumor characterized by proliferation of neoplastic cells. The compounds of the invention may also be useful in the prevention and treatment of TRX-mediated diseases, such as autoimmune, allergic and inflammatory diseases, and in the prevention and/or treatment of diseases of the central nervous system (CNS), such as neurodegenerative diseases. The present invention further provides pharmaceutical compositions comprising the compounds of the instant invention and safe dosing regimens of these pharmaceutical compositions, which are easy to follow, and which result in a therapeutically effective amount of these compounds in vivo.