HER2 Antibodies Epitope Segmentation Dimerization

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Solution Overview

Problem

Current HER2-targeted therapies, such as trastuzumab and pertuzumab, have limitations in efficacy and specificity, particularly in internalization efficiency and broad applicability across HER2 expression levels, necessitating the development of more effective and specific monoclonal antibodies for treating HER2-related cancers.

Innovation Solution

Development of novel fully human monoclonal HER2 antibodies that bind to distinct epitopes, exhibit enhanced internalization, and demonstrate improved ADCC-mediated killing of HER2-expressing cells, with the ability to target both high and low HER2 expression levels, and are designed for use as ADCs or bispecific formats to enhance therapeutic outcomes.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If trastuzumab is used to block HER2 homodimerization, then ligand-independent HER2 homodimerization is inhibited, but efficacy is limited to 20-50% of HER2 overexpressing breast tumor patients and relapse occurs after a few months

Engineering Contradiction:
Improvedurability of responseVSAvoidefficacy across different patient subgroups
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent divides the HER2 extracellular domain into multiple epitope regions (domain I-IV) and develops antibodies targeting each segment independently. This segmentation allows the therapy to address different HER2 expression levels and dimerization states, thereby improving both durability of response and adaptability across different patient subgroups.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent creates a multi-functional antibody therapy that can simultaneously block homodimerization, inhibit heterodimerization, prevent ectodomain shedding, and mediate ADCC. This multi-functionality enables the therapy to be effective across diverse patient populations with varying HER2 expression levels, addressing both durability and versatility requirements.

Inventive Principle:
Principle #6Universality (Multi-functionality)

2Reliability

If pertuzumab is used to inhibit heterodimerization, then ligand-induced heterodimerization is blocked, but internalization efficiency is reduced compared to trastuzumab

Engineering Contradiction:
Improvedimerization blockadeVSAvoidinternalization efficiency
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent combines the dimerization blockade mechanism of pertuzumab (targeting domain II) with the internalization enhancement mechanism of trastuzumab (targeting domain IV). By developing bispecific antibodies or combining both mechanisms in a single therapy, the patent achieves both reliable dimerization inhibition and high internalization efficiency.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The patent employs composite antibody structures, including bispecific antibodies that integrate different epitope-specific binding domains. This composite approach allows the therapy to simultaneously achieve dimerization blockade and enhanced internalization, resolving the contradiction between reliability of dimerization inhibition and productivity of internalization.

Inventive Principle:
Principle #40Composite materials

3Object-affected harmful factors

If trastuzumab is used to prevent ectodomain shedding, then constitutively active truncated protein formation is prevented, but the mechanism requires high HER2 overexpression levels

Engineering Contradiction:
Improveconstitutively active protein formationVSAvoidapplicability across HER2 expression levels
Core Design Contradiction:
Object-affected harmful factorsVSAdaptability or versatility

Solution Approach 1:

The patent applies different antibody mechanisms to different local regions of the HER2 protein. Antibodies targeting domain IV (like trastuzumab) are used to prevent ectodomain shedding in high-expression contexts, while antibodies targeting other domains are employed in low-expression contexts. This localized approach maintains effectiveness across varying HER2 expression levels while preventing harmful truncated protein formation.

Inventive Principle:
Principle #3Local quality

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

These antibodies show increased efficacy in killing HER2-expressing tumor cells, improved internalization, and enhanced ADCC, providing effective treatment options for both high and low HER2-expressing cancers, potentially offering better therapeutic outcomes compared to existing therapies.

Implementation Method 1

monoclonal antibodies directed to human epidermal growth factor receptor 2 (HER2)

Methodology Applied
Scientific EffectAntibody binding:

Implementation Method 2

Trastuzumab mediates antibody-dependent cellular cytotoxicity (ADCC)

Methodology Applied
Scientific EffectAntibody-dependent cellular cytotoxicity:

Implementation Method 3

Trastuzumab mediates antibody-dependent cellular cytotoxicity (ADCC) and prevents ectodomain shedding

Methodology Applied
Scientific EffectEctodomain shedding prevention:

Data Source

PatentEP2576621B1Monoclonal antibodies against her2
Publication Date: 2019.04.10 GENMAB AS
  • EP2576621B1 patent drawingFigure 1A~1B
  • EP2576621B1 patent drawingFigure 1C~1D
  • EP2576621B1 patent drawingFigure 1E~1F

AI summary

Isolated monoclonal antibodies which bind to human epidermal growth factor receptor 2 (HER2), and related antibody-based compositions and molecules, are disclosed. Pharmaceutical compositions comprising the antibodies and therapeutic and diagnostic methods for using the antibodies are also disclosed.