Heterocyclic Amide Kinase Inhibitors Selectivity

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Solution Overview

Problem

There is a need for effective inhibitors of protein kinases to treat or prevent disease states associated with abnormal cell proliferation, requiring compounds with high affinity and selectivity for target kinases such as CHK1, CHK2, VEGF-R2, Pim-1, PDK-1, CDKs, and CDK/cyclin complexes, as well as receptor and non-receptor tyrosine kinases.

Innovation Solution

Development of a novel class of heterocyclic amide compounds that function as protein kinase inhibitors, which can be used in pharmaceutical compositions to treat proliferative diseases, inflammation, arthritis, neurological disorders, cardiovascular diseases, and viral or fungal infections by targeting specific protein kinases.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If existing CDK inhibitors are used, then cell proliferation can be controlled, but selectivity among different kinase targets is insufficient

Engineering Contradiction:
ImproveselectivityVSAvoidkinase target coverage
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent applies local quality by designing specific molecular regions in the heterocyclic amide compounds that interact with particular kinase active sites. The compounds contain functional groups (such as amide bonds, heterocyclic rings) positioned to form specific hydrogen bonds and hydrophobic interactions with residues in the ATP-binding pocket of target kinases like CDK2, CHK1, and VEGF-R2, thereby achieving selectivity for specific kinase isoforms while maintaining broad kinase target coverage.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent employs parameter changes by systematically varying structural parameters of the heterocyclic amide core (such as substituent types, ring positions, stereochemistry) to optimize binding affinity and selectivity for different kinase targets. By changing molecular weight, logP, and specific functional group positions, the compounds achieve differential inhibition profiles across kinase families, resolving the contradiction between selectivity and versatility.

Inventive Principle:
Principle #35Parameter changes

2Adaptability or versatility

If broad-spectrum kinase inhibitors are developed, then multiple disease targets can be addressed, but specificity for individual kinase isoforms decreases

Engineering Contradiction:
Improvedisease target coverageVSAvoidkinase isoform specificity
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The patent applies segmentation by dividing the kinase target family into distinct groups (CDKs, CHKs, VEGF-R, Pim kinases) and designing compound series with specific structural features optimized for each group. The heterocyclic amide core provides a platform for attaching different substituent patterns that selectively engage with isoform-specific residues, enabling broad disease target coverage while maintaining isoform specificity through modular structural design.

Inventive Principle:
Principle #1Segmentation

3Reliability

If high-affinity kinase binders are designed, then inhibitory potency increases, but drug metabolism and stability may be compromised

Engineering Contradiction:
Improveinhibitory potencyVSAvoidmetabolic stability
Core Design Contradiction:
ReliabilityVSStability of the object's composition

Solution Approach 1:

The patent applies this principle by incorporating metabolically labile linkers or prodrug moieties into the heterocyclic amide structure that can be cleaved by cellular esterases or other enzymes to release the active inhibitor. This allows the parent compound to have high potency but controlled metabolic stability, with the active form being generated in situ at the target site, thereby balancing inhibitory potency with appropriate metabolic profile.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Data Source

PatentEP2178861B1Heterocyclic amide compounds as protein kinase inhibitors
Publication Date: 2014.08.20 MERCK SHARP & DOHME CORP
  • EP2178861B1 patent drawing
  • EP2178861B1 patent drawing
  • EP2178861B1 patent drawing

AI summary

The present invention relates to novel heterocyclic amide compounds of Formula I: as disclosed herein or a pharmaceutically acceptable salt, solvate, ester, prodrug or stereoisomer thereof. Also disclosed are compositions comprising said compounds, and methods for using said compoundsfor treating or preventing a proliferative disease, an anti-proliferative disorder, inflammation, arthritis, a neurological or neurodegenerative disease, a cardiovascular disease, alopecia, a neuronal disease, an ischemic injury, a viral disease or a fungal disease.