Heterodimeric Antibody Production via Asymmetric CH3 Interface Engineering

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Solution Overview

Problem

Current methods for producing bispecific antibodies and multivalent multimers face challenges such as heavy and light chain miss-pairings, leading to impurities like halfbodies and homodimers, which complicate purification and reduce efficiency, necessitating improved technologies for producing and purifying these biological therapeutics.

Innovation Solution

The development of heterodimeric proteins with specific amino acid variants, such as L351D and T366K in one CH3 domain and L351K in another, along with variants at positions S364, K409, and K360, to enhance heterodimer formation and stability, and destabilize homodimers, facilitating purification through ion exchange chromatography.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Adaptability or versatility

If two antibodies are expressed in a single cell using recombinant DNA technology, then bispecific antibodies can be produced, but heavy and light chain miss-pairings occur leading to impurities like homodimers and halfbodies

Engineering Contradiction:
Improvebisspecific antibody productionVSAvoidpurification complexity
Core Design Contradiction:
Adaptability or versatilityVSManufacturing precision

Solution Approach 1:

The patent introduces asymmetric amino acid substitutions at the CH3-CH3 interface (L351D in one heavy chain and T366K in the other heavy chain). These asymmetric charge modifications create complementary electrostatic interactions that specifically promote heterodimer formation while preventing homodimer formation, thereby resolving the chain miss-pairing problem

Inventive Principle:
Principle #4Asymmetry

Solution Approach 2:

The patent modifies the electrostatic parameters at the CH3 domain interface by introducing charged amino acid substitutions (L351D, T366K, L351K). These parameter changes alter the interaction energies between heavy chains, creating favorable conditions for heterodimerization and unfavorable conditions for homodimerization

Inventive Principle:
Principle #35Parameter changes

2Stability of the object's composition

If amino acid variants are introduced to promote heterodimer formation, then heterodimer stability increases, but homodimers may still form as impurities

Engineering Contradiction:
Improve heterodimer stabilityVSAvoidhomodimer impurities
Core Design Contradiction:
Stability of the object's compositionVSObject-generated harmful factors

Solution Approach 1:

By introducing asymmetric charge substitutions (L351D in one chain, T366K and L351K in the other), the patent creates an interface where heterodimers benefit from complementary charge interactions while homodimers experience electrostatic repulsion or lack of favorable interactions, thereby stabilizing heterodimers and preventing homodimer formation

Inventive Principle:
Principle #4Asymmetry

Solution Approach 2:

The patent converts the potential harm of charge modifications (which could destabilize the complex) into a benefit by strategically placing opposite charges at the interface. The charge substitutions that might seem disruptive actually promote specific heterodimer formation through complementary electrostatic attraction

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

3Productivity

If multiple heavy chains with variations are expressed to drive heterodimer formation, then bisspecific antibody production increases, but three different antibody species and halfbody impurities are generated

Engineering Contradiction:
Improvebisspecific antibody yieldVSAvoidimpurity content
Core Design Contradiction:
ProductivityVSQuantity of substance

Solution Approach 1:

The asymmetric charge substitutions create a system where only specific heavy chain pairings (heterodimers) are stabilized. This asymmetry ensures that even when multiple heavy chains are expressed, only the intended bisspecific heterodimers form efficiently, while other combinations (homodimers, mismatched pairs) are thermodynamically disfavored

Inventive Principle:
Principle #4Asymmetry

Solution Approach 2:

By modifying the electrostatic parameters at the CH3 interface, the patent changes the binding affinity landscape to favor heterodimer formation. This parameter change increases productivity by directing the expression system toward the desired product while minimizing impurity generation

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach results in high-yield, predominantly heterodimeric proteins with improved stability and purity, simplifying the purification process and increasing the efficiency of the expression system by reducing unwanted species like halfbodies and homodimers.

Implementation Method 1

facilitating purification through ion exchange chromatography

Methodology Applied
Scientific EffectIon exchange chromatography: Ion Exchange

Data Source

PatentUS20230212321A1Methods and means for the production of ig-like molecules
Publication Date: 2023.07.06 MERUS NV
  • US20230212321A1 patent drawing
  • US20230212321A1 patent drawing
  • US20230212321A1 patent drawing

AI summary

The invention relates to heterodimeric proteins, and their methods of production and collection, that are useful to treat human disease.