High-Affinity Thrombin Aptamers for Targeted Thrombin Inhibition

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Solution Overview

Problem

Current direct oral anticoagulants (DOACs) like dabigatran have limitations such as side effects, drug interactions, bleeding risks, and contraindications, necessitating the development of safer and more effective alternatives for treating thrombosis and related conditions.

Innovation Solution

Development of thrombin-specific aptamers, including sequences such as SEQ ID NO: 1, SEQ ID NO: 7, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, and SEQ ID NO: 21, which can be used in pharmaceutical compositions with stabilizing moieties, and kits for treating thrombosis and adverse events from aptamer therapy.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If direct oral anticoagulants (DOACs) like dabigatran are used to treat thrombosis, then thrombin inhibition effectiveness is improved, but side effects and drug interactions increase

Engineering Contradiction:
Improvethrombin inhibition effectivenessVSAvoidside effects and drug interactions
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent uses aptamers as simplified copies of natural anticoagulant molecules that specifically target thrombin. These aptamers replicate the therapeutic effect of natural anticoagulants while avoiding the complex metabolic pathways that cause drug interactions, thus resolving the contradiction between effectiveness and safety

Inventive Principle:
Principle #26Copying

Solution Approach 2:

The patent modifies the chemical structure parameters of traditional anticoagulants by using nucleic acid-based aptamers instead of small molecule drugs. This fundamental parameter change allows for high specificity and affinity binding to thrombin while eliminating the metabolic enzyme interactions that cause adverse effects

Inventive Principle:
Principle #35Parameter changes

2Reliability

If conventional anticoagulants are used to treat thrombosis, then thrombin inhibition is achieved, but monitoring complexity and dose adjustment requirements increase

Engineering Contradiction:
Improvethrombin inhibitionVSAvoidmonitoring and dose adjustment
Core Design Contradiction:
ReliabilityVSEase of operation

Solution Approach 1:

The aptamers are designed with self-regulating properties where their binding affinity to thrombin automatically adjusts to therapeutic levels. The molecules naturally saturate thrombin binding sites without requiring external monitoring or dose adjustments, eliminating the need for frequent blood tests and physician interventions

Inventive Principle:
Principle #25Self-service

3Ease of operation

If dabigatran is used as a thrombin inhibitor, then oral administration convenience is improved, but gastrointestinal side effects and throat irritation increase

Engineering Contradiction:
Improveoral administration convenienceVSAvoidgastrointestinal side effects and throat irritation
Core Design Contradiction:
Ease of operationVSObject-affected harmful factors

Solution Approach 1:

The patent employs short-lived aptamer molecules that are rapidly cleared from the gastrointestinal tract after exerting their therapeutic effect. These disposable-like molecules provide transient protection against thrombosis without accumulating in the GI tract, thus avoiding chronic irritation while maintaining oral administration convenience

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The aptamers effectively inhibit thrombin activity, reducing thrombosis risk and ameliorating adverse events, with specific binding affinities and minimal side effects, as demonstrated by in vitro and ex vivo studies.

Implementation Method 1

The aptamers effectively inhibit thrombin activity, reducing thrombosis risk and ameliorating adverse events, with specific binding affinities

Methodology Applied
Scientific EffectMolecular binding:

Data Source

PatentUS20250304973A1High-affinity thrombin aptamers and methods of use
Publication Date: 2025.10.02 AYASS BIOSCIENCE LLC
  • US20250304973A1 patent drawing
  • US20250304973A1 patent drawing
  • US20250304973A1 patent drawing

AI summary

Disclosed are aptamers, aptamer antidotes, and their use in the treatment of thrombosis and other thrombotic conditions.