Inducible Coexpression Vectors for Homogeneous Protein Expression

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Solution Overview

Problem

Current inducible bacterial protein expression systems face challenges in coexpressing multiple gene products due to compatibility issues, 'crosstalk' effects, and metabolic regulation, leading to suboptimal expression and production of proteins that require tight control or have poor solubility.

Innovation Solution

Development of coordinated bacterial coexpression systems using compatible homogenously inducible promoter systems on separate expression constructs activated by different inducers, such as L-arabinose and propionate, to achieve controlled induction and improved compatibility, allowing for the expression of multimeric proteins and proteins forming disulfide bonds.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If wild-type E. coli lac and ara systems are used for inducible protein expression, then individual proteins can be expressed, but homogeneous induction throughout the entire growth culture population cannot be achieved due to the all-or-none phenomenon

Engineering Contradiction:
Improvehomogeneous inductionVSAvoidinduction control
Core Design Contradiction:
ReliabilityVSEase of operation

Solution Approach 1:

The patent removes the inducer-dependent transport proteins (lacY and araE) from the system by using strains with deletions in these genes. This extraction of the problematic feedback mechanism eliminates the all-or-none phenomenon while preserving the inducible expression capability through alternative inducer uptake mechanisms.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent introduces alternative inducer uptake mechanisms that are not dependent on the problematic transport proteins. By using intermediaries such as passive diffusion or alternative transporters, the system achieves homogeneous induction without the positive feedback loop that causes the all-or-none effect.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Adaptability or versatility

If multiple inducible promoters are used for coexpression of multiple gene products, then different proteins can be expressed simultaneously, but compatibility issues and crosstalk effects occur between the promoter systems

Engineering Contradiction:
Improvecoexpression capabilityVSAvoidsystem compatibility
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The patent divides the coexpression system into separate, independent promoter modules (lac promoter and ara promoter) that can be controlled independently. By segmenting the control mechanisms and removing the feedback loops that cause crosstalk, each promoter system operates autonomously without interfering with the other, enabling reliable coexpression of multiple gene products.

Inventive Principle:
Principle #1Segmentation

3Productivity

If inducer concentration is increased to overcome the all-or-none phenomenon, then a higher proportion of cells enter high-expression mode, but uncontrolled positive feedback occurs leading to excessive inducer accumulation

Engineering Contradiction:
Improveexpression levelVSAvoidexpression control
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The patent extracts the problematic inducer-dependent transport proteins (lacY and araE) from the system. By removing these proteins that create the positive feedback loop, the system can achieve high expression levels without the uncontrolled accumulation of inducer that occurs in wild-type systems.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent eliminates the positive feedback mechanism by removing the inducer-dependent transport proteins. Without these proteins, increased inducer concentration does not lead to increased transport and subsequent uncontrolled expression, thereby providing reliable control over expression levels while maintaining productivity.

Inventive Principle:
Principle #23Feedback

Data Source

PatentEP4039810A1Vectors for use in an inducible coexpression system
Publication Date: 2022.08.10 ABSCI CORPORATION
  • EP4039810A1 patent drawingFigure 1
  • EP4039810A1 patent drawingFigure 2
  • EP4039810A1 patent drawingFigure 3

AI summary

The present invention provides expression vectors for use in an inducible coexpression system, capable of controlled induction of expression of each gene product.