Insect Aspartate 1-Decarboxylase in Yeast for Acidic 3-HP Fermentation

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Solution Overview

Problem

Current methods for large-scale production of 3-hydroxypropionic acid (3-HP) using yeast are inefficient due to challenges in pathway engineering, enzyme compartmentalization, and yeast tolerance, leading to low production rates and high costs.

Innovation Solution

Expression of insect aspartate 1-decarboxylase (ADC) in yeast hosts significantly enhances 3-HP production by optimizing metabolic pathways and enzyme activity, allowing for higher yields and tolerance to acidic conditions.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If bacteria are used to ferment sugars to organic acids, then high production rates can be achieved, but the bacteria cannot perform well in strongly acidic environments and become economically unviable

Engineering Contradiction:
Improveproduction rateVSAvoidyeast tolerance to acidic conditions
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The patent combines the high productivity capability of bacteria with the acid tolerance of yeast by expressing bacterial aspartate 1-decarboxylase enzyme in yeast cells. This merging allows the system to achieve both high production rates and tolerance to strongly acidic environments (pH 2.0-3.5), resolving the contradiction between productivity and reliability.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The bacterial aspartate 1-decarboxylase enzyme acts as an intermediary that enables yeast to produce 3-HP at high rates while tolerating acidic conditions. The enzyme mediates the conversion of aspartate to beta-alanine, which is then converted to 3-HP, allowing the yeast to function effectively in acidic environments that would otherwise inhibit their growth.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Productivity

If pathway engineering is performed in yeast to produce organic acids, then 3-HP production can be achieved, but the process becomes more difficult due to enzyme compartmentalization in cytoplasm, mitochondria, or peroxisomes

Engineering Contradiction:
Improve3-HP productionVSAvoidpathway engineering complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent extracts the rate-limiting step (aspartate 1-decarboxylase activity) from the complex yeast metabolic pathway and introduces the bacterial enzyme to perform this specific function. By taking out this critical step and providing a highly efficient enzyme from bacteria, the patent simplifies the overall pathway engineering challenge while achieving high 3-HP production.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent changes the enzymatic parameter by introducing a bacterial enzyme with different kinetic properties and substrate affinity compared to yeast endogenous enzymes. This parameter change in enzyme efficiency and specificity overcomes the limitations of yeast's compartmentalized metabolism and achieves high productivity without requiring complex pathway reengineering.

Inventive Principle:
Principle #35Parameter changes

3Reliability

If buffer is added to maintain higher pH to prevent bacterial death, then cell viability is improved, but organic acid product recovery becomes more difficult and expensive

Engineering Contradiction:
Improvecell viabilityVSAvoidproduct recovery
Core Design Contradiction:
ReliabilityVSEase of manufacture

Solution Approach 1:

Instead of maintaining high pH to protect cells (the conventional approach), the patent inverts the strategy by allowing the medium to become strongly acidic (pH 2.0-3.5) and engineering the yeast to thrive in these conditions. This inversion eliminates the need for buffering, simplifies product recovery, and reduces manufacturing costs while maintaining high cell viability and productivity.

Inventive Principle:
Principle #13The other way round (Inversion)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The approach results in increased 3-HP production rates and improved economic viability for industrial-scale fermentation, overcoming previous limitations in yeast-based production methods.

Implementation Method 1

Expression of insect aspartate 1-decarboxylase (ADC) in yeast hosts significantly enhances 3-HP production by optimizing metabolic pathways and enzyme activity

Methodology Applied
Scientific EffectEnzyme catalysis: Enzyme

Implementation Method 2

Yeast are used as biocatalysts in a number of industrial fermentations, and present several advantages over bacteria

Methodology Applied
Scientific EffectFermentation: Fermentation

Data Source

PatentEP3027733B13-hydroxypropionic acid production by recombinant yeasts expressing an insect aspartate 1-decarboxylase
Publication Date: 2018.09.12 NOVOZYMES AS
  • EP3027733B1 patent drawingFigure 1
  • EP3027733B1 patent drawingFigure 2
  • EP3027733B1 patent drawingFigure 3

AI summary

Provided herein are recombinant yeast cells having an active 3-Hydroxypropionic Acid (3-HP) pathway and further comprising a heterologous polynucleotide encoding an aspartate 1-decarboxylase (ADC) of the Class Insecta, Bivalvia, Branchiopoda, Gastropoda, or Leptocardii. Also described are methods of using the recombinant yeast cells to produce 3-HP and acrylic acid.