Intein Proteins Split-Vector Gene Therapy

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Solution Overview

Problem

Current gene therapy using adeno-associated viral (AAV) vectors is limited by their cargo capacity, preventing effective treatment of diseases caused by mutations in genes with coding sequences larger than 5 kb, such as Duchenne muscular dystrophy and inherited retinal degenerations, due to inefficient transgene expression and stability issues with dual or triple vector systems.

Innovation Solution

The use of multiple AAV vectors, each encoding fragments of a large protein flanked by split-inteins, facilitates protein trans-splicing and full-length protein reconstitution in cells, overcoming limitations in DNA concatemer formation and mRNA stability through intein-mediated protein splicing.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Quantity of substance

If multiple AAV vectors are used to deliver large genes (>5 kb), then the cargo capacity limitation is overcome, but transgene expression efficiency and mRNA stability deteriorate

Engineering Contradiction:
Improvecargo capacityVSAvoidtransgene expression efficiency
Core Design Contradiction:
Quantity of substanceVSReliability

Solution Approach 1:

The patent introduces intein-mediated protein splicing as an intermediary mechanism to resolve the contradiction between cargo capacity and expression efficiency. By using inteins as self-splicing elements that facilitate the joining of protein fragments from multiple AAV vectors, the system achieves efficient reconstitution of full-length large proteins without relying on inefficient DNA concatemer formation or mRNA processing. The intein acts as a molecular mediator that enables reliable protein expression from segmented genetic material.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Length of stationary object

If dual or triple vector systems are used to deliver large genes, then the coding sequence capacity is increased, but DNA concatemer formation and mRNA stability worsen

Engineering Contradiction:
Improvecoding sequence lengthVSAvoidmRNA stability
Core Design Contradiction:
Length of stationary objectVSStability of the object's composition

Solution Approach 1:

The patent replaces the mechanical system of DNA-level operations (concatemer formation, transcription of large multi-vector mRNAs) with a protein-level operation (intein-mediated splicing). Instead of relying on stable DNA concatemers and long mRNA transcripts, the system uses inteins to directly join protein fragments after translation, bypassing the instability issues inherent in multi-vector DNA and RNA systems.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

3Reliability

If single AAV vectors are used, then transgene expression efficiency is maintained, but the maximum coding sequence length is limited to 5 kb

Engineering Contradiction:
Improvetransgene expression efficiencyVSAvoidcoding sequence length
Core Design Contradiction:
ReliabilityVSLength of stationary object

Solution Approach 1:

The patent applies segmentation by dividing the coding sequence of large genes into multiple fragments, each fitting within the 5 kb capacity of a single AAV vector. These segmented coding sequences are distributed across multiple vectors, which are then co-delivered to target cells. The intein-mediated splicing system reconstructs the full-length functional protein from these segmented fragments, effectively overcoming the single-vector size limitation while maintaining expression efficiency.

Inventive Principle:
Principle #1Segmentation

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach enhances the expression of larger proteins, achieving therapeutic levels and improving treatment outcomes for diseases previously beyond the reach of single AAV vectors, particularly in inherited retinal degenerations and muscular dystrophy.

Implementation Method 1

The use of multiple AAV vectors, each encoding fragments of a large protein flanked by split-inteins, facilitates protein trans-splicing and full-length protein reconstitution in cells

Methodology Applied
Scientific EffectProtein splicing:

Data Source

PatentUS20210371878A1Intein proteins and uses thereof
Publication Date: 2021.12.02 FOND AZIONE TELETHON
  • US20210371878A1 patent drawing
  • US20210371878A1 patent drawing
  • US20210371878A1 patent drawing

AI summary

The present invention relates to constructs, vectors, relative host cells and pharmaceutical compositions which allow an effective gene therapy, in particular of genes larger than 5 Kb.