IRE1 Activating Compounds for Selective Proteostasis

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Solution Overview

Problem

Current IRE1 activating compounds for treating diseases associated with ER stress have off-pathway activity and pleiotropic toxicity due to binding other protein kinases, limiting their utility in pharmacologic IRE1/XBP1s activation.

Innovation Solution

Development of non-toxic, highly-selective compounds that activate the IRE1/XBP1s signaling pathway independently of the IRE1 kinase domain, avoiding binding to the nucleotide-binding pocket and minimizing off-target effects.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If compounds bind to the IRE1 nucleotide-binding pocket to activate IRE1, then IRE1/XBP1s signaling is activated, but off-pathway activity and pleiotropic toxicity occur due to binding other protein kinases

Engineering Contradiction:
ImproveIRE1 activation specificityVSAvoidoff-pathway activity and pleiotropic toxicity
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent applies local quality by designing compounds with specific structural features that selectively interact with the IRE1 nucleotide-binding pocket while avoiding binding to other protein kinases. The compounds exhibit selective binding characteristics that localise their activity to the IRE1 pathway, preventing off-pathway effects and pleiotropic toxicity while maintaining reliable IRE1 activation.

Inventive Principle:
Principle #3Local quality

2Productivity

If existing IRE1 activating compounds are used to treat ER stress-related diseases, then therapeutic effect is achieved, but toxicity limits their clinical utility

Engineering Contradiction:
Improvetherapeutic efficacyVSAvoidtoxicity
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent applies parameter changes by modifying the chemical and pharmacological parameters of IRE1 activation. The new compounds exhibit improved pharmacokinetic properties, reduced off-target binding, and optimized potency that maintain therapeutic efficacy while minimizing toxicity. These parameter optimizations enable safer clinical translation compared to existing activators.

Inventive Principle:
Principle #35Parameter changes

3Reliability

If IRE1 is activated to promote adaptive ER proteostasis remodeling, then cellular survival is enhanced, but prolonged activation can induce pro-apoptotic response

Engineering Contradiction:
Improvecellular survivalVSAvoidpro-apoptotic response
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent applies partial action by developing compounds that provide sufficient IRE1 activation to achieve adaptive proteostasis remodeling and cellular survival without causing excessive or prolonged activation that would trigger pro-apoptotic responses. The compounds exhibit optimized potency and duration of action that strike the right balance between protective and harmful effects.

Inventive Principle:
Principle #16Partial or excessive action

Data Source

PatentUS11426402B2IRE1 activating compounds for use in therapy
Publication Date: 2022.08.30 THE SCRIPPS RES INST
  • US11426402B2 patent drawing
  • US11426402B2 patent drawing
  • US11426402B2 patent drawing

AI summary

Disclosed herein are compounds, their pharmaceutical salts, and pharmaceutical compositions that selectively activate the inositol-requiring enzyme 1 (IRE1)/X-box binding protein 1 (XBP1s) signaling pathway of the unfolded protein response (UPR), but that do not target the IRE1 kinase domain. The compounds are useful in treating diseases or conditions characterized by imbalances in proteostasis within the endoplasmic reticulum (ER) or secretory pathway, including those not associated with ER stress or activation of UPR.