LC-MS Peak Verification Using Signal Ratios and Reference Checks

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Solution Overview

Problem

Existing LC-MS assays face challenges in accurately identifying and verifying analyte peaks due to improper peak integration, which is often dependent on peak area ratios and prone to errors from noisy backgrounds or tailing peaks, leading to manual review requirements and increased human workload.

Innovation Solution

A method for identifying and verifying analyte peaks in LC-MS chromatograms by determining ratios of quantifier and qualifier signal intensities over time, comparing these ratios to references, and using automated equipment to analyze data points for peak verification.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If peak integration is used for analyte peak identification and result calculation, then the process is automated and efficient, but accuracy deteriorates due to improper integration in noisy backgrounds or aged equipment

Engineering Contradiction:
Improveautomation efficiencyVSAvoidpeak identification accuracy
Core Design Contradiction:
ProductivityVSMeasurement precision

Solution Approach 1:

The patent introduces an intermediary verification step using qualifier peaks and retention time windows to validate analyte peak identification before final quantification. This intermediary check acts as a mediator between automated peak integration and final results, preventing erroneous integrations from affecting accuracy while maintaining overall automation.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent implements feedback mechanisms where qualifier peak ratios and retention time deviations are continuously monitored and compared against acceptance criteria. When deviations exceed thresholds, the system flags results for manual review or rejects them automatically, creating a feedback loop that improves accuracy without completely abandoning automated integration.

Inventive Principle:
Principle #23Feedback

2Measurement precision

If manual peak review by experts is performed to verify peak integration, then accuracy improves, but human workload and time consumption increase

Engineering Contradiction:
Improvepeak identification accuracyVSAvoidmanual review time
Core Design Contradiction:
Measurement precisionVSLoss of time

Solution Approach 1:

Instead of requiring manual review of all peaks, the patent applies partial action by only flagging peaks that exceed predefined acceptance criteria for manual verification. Most peaks that meet criteria are automatically accepted, while only problematic cases require expert review, significantly reducing overall manual workload while maintaining accuracy.

Inventive Principle:
Principle #16Partial or excessive action

Solution Approach 2:

The system performs self-verification through automated monitoring of qualifier peak ratios and retention time windows. The automated system catches and flags most integration errors itself, reducing the burden on manual reviewers and allowing experts to focus only on cases that truly require their judgment.

Inventive Principle:
Principle #25Self-service

3Adaptability or versatility

If multiple quality control parameters are monitored based on peak integration, then comprehensive quality assurance is achieved, but reliability deteriorates when integration fails

Engineering Contradiction:
Improvequality control coverageVSAvoidresult reliability
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The patent segments quality control into multiple independent parameter checks: retention time window verification, qualifier peak ratio monitoring, and analyte-to-internal standard ratio validation. Each segment checks a different aspect of peak quality, so failure in one integration does not necessarily invalidate all quality control parameters, improving overall reliability.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent adds another dimension to quality control by monitoring qualifier peak ratios and retention time deviations alongside traditional peak area measurements. This multi-dimensional approach provides redundant verification pathways, so if integration fails in one dimension, other dimensions can still detect and flag the problem, enhancing reliability.

Inventive Principle:
Principle #17Another dimension (Dimensionality change)

Data Source

PatentUS12625117B2Quality control tools for LC-MS
Publication Date: 2026.05.12 ROCHE DIAGNOSTICS OPERATIONS INC
  • US12625117B2 patent drawing
  • US12625117B2 patent drawing
  • US12625117B2 patent drawing

AI summary

A method for identifying and/or verifying at least one analyte peak in a chromatogram of a sample for said analyte from a liquid chromatography mass spectrometer device, said method comprising: a) determining a chromatogram of the sample by acquiring a plurality of data points for quantifier signal intensities and/or qualifier signal intensities, over time; and, in case the sample comprises an internal standard, optionally acquiring a plurality of data points for internal standard quantifier signal intensities and/or internal standard qualifier signal intensities, over time; b) determining for at least a fraction of the data points acquired in step a), a ratio type; c) comparing the ratios determined in step b) to a reference; and d) identifying and/or verifying at least one analyte peak in a chromatogram based on comparison step c).