Antigen-Specific Lymphocyte Expansion Using Neo-Antigen Peptide Pools

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Solution Overview

Problem

Current protocols for expanding tumor-infiltrating lymphocytes (TILs) lack optimization for maximizing the recovery of neo-antigen-specific T cell clones, which are crucial for effective immunotherapy, particularly in cancer treatment.

Innovation Solution

A method involving the culture of lymphocytes in the presence of multiple peptides comprising different tumor-specific neo-antigens, using antigen-presenting cells (APCs) to enhance the expansion and enrichment of antigen-specific lymphocytes through controlled expansion phases, including a pre-rapid expansion protocol (pre-REP) and rapid expansion protocol (REP), with the use of cytokines and immunomodulatory agents.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Quantity of substance

If conventional TIL expansion protocols are used, then a bulk amount of TILs can be obtained, but the frequency and specificity of neo-antigen-specific T cell clones is insufficient

Engineering Contradiction:
Improvebulk amount of TILsVSAvoidfrequency and specificity of neo-antigen-specific T cell clones
Core Design Contradiction:
Quantity of substanceVSMeasurement precision

Solution Approach 1:

The patent applies preliminary action by incorporating peptide pools comprising neo-antigens into the initial TIL culture setup before expansion begins. This pre-stimulation ensures that neo-antigen-specific T cell clones are selectively activated and enriched from the outset, rather than attempting to isolate and expand them separately afterward. The peptide pools are added to the culture medium or presented by APCs during the initial culture phase, enabling specific T cells to proliferate preferentially while maintaining overall TIL quantity.

Inventive Principle:
Principle #10Preliminary action

2Measurement precision

If multiple peptides comprising different neo-antigens are used in culture, then antigen-specific lymphocytes are enriched and expanded, but the complexity of the culture system increases

Engineering Contradiction:
Improveenrichment of antigen-specific lymphocytesVSAvoidcomplexity of culture system
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent applies universality by using peptide pools that can be presented by multiple types of antigen-presenting cells (APCs), including dendritic cells, B cells, and macrophages. These APCs can be generated from the patient's own tumor samples or normal tissues, making the system adaptable to different patient contexts. The peptide pools are designed to cover multiple neo-antigens simultaneously, allowing a single culture system to enrich for multiple antigen-specific T cell clones rather than requiring separate cultures for each antigen.

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Quantity of substance

If conventional expansion protocols are used, then TILs can be expanded to high numbers, but neo-antigen-specific T cell clones may be counter-selected by the thymus

Engineering Contradiction:
Improvenumber of expanded TILsVSAvoidmaintenance of neo-antigen-specificity
Core Design Contradiction:
Quantity of substanceVSReliability

Solution Approach 1:

The patent applies preliminary action by performing thymic selection bias correction during the initial culture phase before bulk expansion occurs. Peptide pools comprising neo-antigens are introduced to stimulate and select for T cell clones with high affinity for these antigens. This early selection ensures that only T cells with appropriate specificity and functionality are allowed to proliferate in subsequent expansion phases, preventing the counter-selection that would occur if expansion happened without prior peptide stimulation.

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach significantly enhances the frequency and specificity of antigen-specific lymphocytes, reducing exhaustion and improving the efficacy of personalized immunotherapy by preferentially expanding tumor-specific T cells while minimizing the expansion of non-tumor cells.

Implementation Method 1

The invention relates to a method for expanding antigen-specific lymphocytes by culturing samples from a subject containing lymphocytes or culturing lymphocytes derived from the sample in the presence of one or more peptides comprising antigens and/or in the presence of an antigen presenting cell presenting antigens

Methodology Applied
Scientific EffectMHC molecule antigen presentation:

Implementation Method 2

using antigen-presenting cells (APCs) to enhance the expansion and enrichment of antigen-specific lymphocytes through controlled expansion phases, including a pre-rapid expansion protocol (pre-REP) and rapid expansion protocol (REP), with the use of cytokines and immunomodulatory agents

Methodology Applied
Scientific EffectCytokine signaling:

Data Source

PatentUS20200338125A1Method for expansion of lymphocytes
Publication Date: 2020.10.29 LUDWIG INSTITUTE FOR CANCER RESEARCH LTD
  • US20200338125A1 patent drawing
  • US20200338125A1 patent drawing
  • US20200338125A1 patent drawing

AI summary

The invention relates to a method for expanding antigen-specific lymphocytes by culturing samples from a subject containing lymphocytes or lymphocytes derived from the sample in the presence of one or more peptides comprising antigens and/or in the presence of an antigen presenting cell presenting antigens. Also disclosed is the use of such method for improving personalized immunotherapy (e.g., tumor immunotherapy).