MEMS Platform for Single-Molecule Conductance Detection

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Solution Overview

Problem

Current microbial detection methods, such as PCR-based techniques, are time-consuming, costly, and require multiple amplification steps, enzymatic reactions, and optical readouts, making them prone to false positives and inefficient for rapid identification of specific microbial species.

Innovation Solution

A MEMS-based platform that measures the conductance of single molecules using nanostructured electrodes with sub-angstrom precision, allowing for direct detection of nucleic acid sequences without enzymatic amplification, enabling rapid and sensitive identification of microbial species by measuring electrical properties at the single-molecule level.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If PCR-based techniques are used for microbial detection, then detection sensitivity is improved, but detection time and process complexity increase significantly

Engineering Contradiction:
Improvedetection sensitivityVSAvoiddetection time
Core Design Contradiction:
Measurement precisionVSLoss of time

Solution Approach 1:

The patent extracts the essential detection function from complex PCR amplification processes and implements it through direct single-molecule conductance measurement. By taking out only the necessary sensing capability and eliminating amplification steps, the system achieves rapid detection without sacrificing sensitivity.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent replaces the biochemical amplification system (PCR enzymes, temperature cycling) with a direct electrical measurement system. The mechanical/biochemical amplification process is substituted with an electrical conductance measurement that directly detects the target molecule's presence through its effect on electron transport.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Reliability

If multiple amplification steps and enzymatic reactions are used, then detection reliability is improved, but device complexity and cost increase

Engineering Contradiction:
Improvedetection reliabilityVSAvoidprocess complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent extracts the core detection function from the complex multi-step PCR process, removing unnecessary amplification steps and enzymatic reactions. Only the essential conductance measurement capability is retained, significantly simplifying the device while maintaining reliability through direct single-molecule detection.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The target DNA molecule itself serves as the sensing element in the conductance measurement. The molecule's inherent electrical properties are directly measured without requiring external enzymes or amplification agents, making the system self-sufficient and eliminating complex biochemical components.

Inventive Principle:
Principle #25Self-service

3Loss of information

If optical readout systems are used for DNA detection, then sequence identification capability is improved, but system complexity and reagent requirements increase

Engineering Contradiction:
Improvesequence identification capabilityVSAvoidsystem complexity
Core Design Contradiction:
Loss of informationVSDevice complexity

Solution Approach 1:

The patent substitutes the optical detection system with an electrical measurement system. Instead of using fluorescent markers and optical readout equipment, the system directly measures the electrical conductance of the DNA molecule, replacing complex optical infrastructure with simpler electrical measurement components.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent uses the electrical conductance signature of the DNA molecule as a direct copy of its sequence information. Rather than creating optical copies through fluorescent labeling, the inherent electrical properties of the DNA sequence serve as the informational carrier, eliminating the need for separate labeling and detection systems.

Inventive Principle:
Principle #26Copying

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach provides a quick, inexpensive, and reliable method for detecting specific microbial species, including strain-level identification, without the need for enzymatic amplification or fluorescent markers, and is suitable for field-deployable devices and high-throughput applications.

Implementation Method 1

an on-chip micro-electromechanical system (MEMS) that is capable of measuring the conductance of a single-molecule by repeatedly bringing two nanostructured electrodes into and out of contact with sub-angstrom precision

Methodology Applied
Scientific EffectMEMS-based actuation: Microelectromechanical Systems

Implementation Method 2

measuring the conductance of a single-molecule by repeatedly bringing two nanostructured electrodes into and out of contact

Methodology Applied
Scientific EffectElectrical conductance measurement: Conduction (electrical)

Data Source

PatentUS11828745B2On-chip platform for single-molecule electrical conductance measurements
Publication Date: 2023.11.28 RGT UNIV OF CALIFORNIA
  • US11828745B2 patent drawing
  • US11828745B2 patent drawing
  • US11828745B2 patent drawing

AI summary

A micro-electromechanical platform and array system and methods for identifying microbial species with single molecule electrical conductance measurements are provided. The electromechanical platform has a two-tier actuation mechanism with a long stroke provided by a comb drive and a fine stroke provided by an in-plane flexural actuator. The platform is capable of making contact with a single-molecule, applying a bias, measuring the current, and performing a large number of measurements for statistical analysis. The system is capable of detecting any microbial species without requiring enzymatic amplification by detecting specific RNA sequences, for example. With oligonucleotide target molecules, the conductance is extremely sensitive to the sequence so even single-nucleotide polymorphisms can be identified. The system can also discern between subspecies using the same DNA probe. The system provides reliable, efficient, and inexpensive detection and species-level identification of microorganisms in complex detecting environments.