Modified Nucleic Acid Construct for Enhanced WT1 Protein Expression

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Solution Overview

Problem

Current immunotherapies face limitations in enhancing the expression level of tumor antigen proteins, particularly the WT1 protein, due to constraints on the amount of RNA that can be introduced into cells, which hampers the efficiency of immune induction.

Innovation Solution

A nucleic acid construct encoding a Wilms tumor gene product or its fragment, optimized with specific mutations and start codon modifications, is introduced into cells to significantly enhance the expression level of the WT1-derived polypeptide independently of expression regulating elements, allowing for improved immune induction with reduced RNA amounts.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Quantity of substance

If the amount of RNA introduced into cells is increased to enhance tumor antigen expression, then the expression level of WT1 protein is improved, but the complexity and quantity of cell preparation increases

Engineering Contradiction:
Improveexpression level of WT1 proteinVSAvoidcomplexity of cell preparation
Core Design Contradiction:
Quantity of substanceVSDevice complexity

Solution Approach 1:

The patent modifies the nucleic acid construct by changing specific parameters: deleting the first ATG start codon, adding a 5' cap structure, and optimizing the 5' UTR region. These parameter changes enable high-level protein expression without requiring large amounts of introduced RNA, thus resolving the contradiction between expression level and preparation complexity

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent creates an optimized copy of the WT1 nucleic acid sequence with modified features (deleted ATG, added cap structure). This optimized copy achieves superior expression efficiency compared to the wild-type sequence, allowing high antigen expression with reduced RNA amounts and simplified preparation procedures

Inventive Principle:
Principle #26Copying

2Quantity of substance

If expression vectors are used to introduce tumor antigens into cells, then the antigen expression is improved, but the therapy is classified as gene therapy with limited application range due to regulations

Engineering Contradiction:
Improvetumor antigen expressionVSAvoidapplication range
Core Design Contradiction:
Quantity of substanceVSAdaptability or versatility

Solution Approach 1:

The patent uses non-integrating nucleic acid constructs (mRNA or plasmid DNA) that provide transient expression rather than permanent genetic modification. This approach achieves sufficient antigen expression for therapy while avoiding the regulatory restrictions associated with permanent gene therapy, thereby expanding application range

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

3Adaptability or versatility

If RNA is introduced into dendritic cells to avoid gene therapy classification, then the application range is improved, but the introduction efficiency and antigen expression level remain low

Engineering Contradiction:
Improveapplication rangeVSAvoidantigen expression level
Core Design Contradiction:
Adaptability or versatilityVSQuantity of substance

Solution Approach 1:

The patent implements multiple parameter changes in the nucleic acid construct: deletion of the first ATG codon to prevent premature translation, addition of a 5' cap structure to enhance translation initiation, and optimization of the 5' UTR region. These changes collectively dramatically improve translation efficiency and antigen expression levels while maintaining the non-integrating nature of the construct, thus resolving the contradiction between application range and expression level

Inventive Principle:
Principle #35Parameter changes

Data Source

PatentUS9783821B2Cell for use in immunotherapy which contains modified nucleic acid construct encoding wilms tumor gene product or fragment thereof, method for producing said cell, and said nucleic acid construct
Publication Date: 2017.10.10 RIKEN CO LTD
  • US9783821B2 patent drawing

AI summary

A cell of the present invention contains a nucleic acid construct encoding a WT1 gene product or a fragment of the WT1 gene product. The nucleic acid construct contains (i) a region encoding a desired fragment of the WT1 gene product and (ii) only AUG as a functional start codon. The present invention can provide a cell into which the nucleic acid construct is introduced so that an expression level of a WT1 gene product or a fragment of the WT1 gene product is remarkably enhanced.